BAC Information

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BAC

Clone NameMSMg01-211N01
Chromosome2 (Build37)
Map Location 34,913,876 - 34,914,173
singlet/doubletsinglet
Overlap geneHc
Upstream genePbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1
Downstream geneAI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211N01.T7 (MSMg01no211_n01.b1)MSMg01-211N01.TJ (MSMg01no211_n01.g1)
ACCAG393397AG393398
length729819
length of high quality
(start - end)
302 (46 - 347)247 (128 - 374)
definitionCHROMAT_FILE: MSMg01no211_n01.b1 PHD_FILE: MSMg01no211_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:19 2005CHROMAT_FILE: MSMg01no211_n01.g1 PHD_FILE: MSMg01no211_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAACCTCTACAAGAGGTAGATGATTTAGACTGCAGAGCTATCCT
CATTTTATGCATAATCAGAGCTTAACTTGCTCAAGGTCACTTGGCTTATA
AATGACTGAGATGGGACTTTGCATCCAGGTCTGGTTCGGTTCCTATGTGT
CACTGAGGGCAACAGTTCAACTGTTGGTCAACCATAGATTGTCCTCTTGT
TTTCCCCATGCAATTGATACAAGAAGGGAACTTCCTTTATGCAAGCTTTT
GAAACACGGTTCTAAAGAGTGTTGTGTTAACTTATAAGTGCACATGACTT
TATTAACAACTCATTTTTTTAACCTCCCCCCCCCCAGTGAGAGCTGCATA
TGTGAGTACATAGGGAAATAAACATGCTAACCCCAAAAATTAAGTCTCTC
ACAGGTTCAGGGTGTACCCCCACACACACACCATCTAAGAATCATCGCAA
GCTTCTAATGACATTAGGACATTTTTAAAGCCACCACTATCTCTATATCT
TTCGCACTGAATATATCACCCTGCCCCCCATTATGATCTTTTACCACTCT
GACCGACCTTATTTTTGCTCGCCCCCCCGCCTTAAGACTTTTTTTAGCCT
GTCCCACACTGATTTAAGAGCCCTGATATTATTTTAATTTTTTTCCAGCC
CCTATTCCCCCTCACACTTTTTTTTCCCC
CCTTTCCTCTCCCTTCTTTTTCCTCTTATTTTTTTTGTCCCTTNNNNNCT
TTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGACAATGGTGCCATCCCAC
TTTGGTCTTTGAGACAGGATCTTTTACTAGTCTGGAATTCACTACATAGG
TGAGACTGGCCAGGGAGCCTCAGGGAGCCCACATGCCCAGTGCTGGGATT
ACAAATATGTGCCACCATACCAGCTCTTTATGTGGGTGCTGGGGATGGAA
CCCAGGCACACATGTTTATACAATGTGCTGGCTAGTTTTTACTGTCAACT
TGGCACTCTTGGGAAGGGAAACCTCACTTGATTAGTTGTGCAGTTCAGAT
GTGTCATATCTCTGAGTTTTTTTTTTCCATGCAAGCCCCACGTGGTAGGA
TCTAGTCCACCGTGGGCAGCTTTACCCCTAGAAAAAAGAAACTTGGTTAT
ATAAGAAGGGTACCCTATTGGCCTGGCCATGACGTTGCCCACCTTTAATC
CCCCCCCTTTTATACACTCACGCGGCCGGTTGTCTTGATTCCCCCGCCTT
TCCTGGTCTTGTTTCCCTTTTATCCCCCCCCCCTCCCCGTACCCTTTGTT
TCTTACCCCCTCCACCCTCCCACTTTTTTTTTTCTCATCCCCATTGTCAC
CCCCCCCCCCCCTTCCATTTTTTATTTTATTCTCCCCCCCCCACTCCCAT
CCTTTATATATTTTATTCCCTTTTTTTAATTATACATCTTCTTTCCCCCT
TTCTCCTCATCATTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_n01.b1 MSMg01no211_n01.b1 CHROMAT_FILE:
MSMg01no211_n01.b1 PHD_FILE: MSMg01no211_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:19 2005
         (302 letters)



>mm_chr2_34913672_34914373
          Length = 702

 Score =  553 bits (286), Expect = e-162
 Identities = 295/298 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttaacctctacaagaggtagatgatttagactgcagagctatcctcattttatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaacctctacaagaggtagatgatttagactgcagagctatcctcattttatg 264

                                                                       
Query: 65  cataatcagagcttaacttgctcaaggtcacttggcttataaatgactgagatgggactt 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cataatcagagcttaatttgctcaaggtcacttggcttataaatgactgagatgggactt 324

                                                                       
Query: 125 tgcatccaggtctggttcggttcctatgtgtcactgagggcaacagttcaactgttggtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgcatccaggtctggttcggttcctatgtgtcactgagggcaacagttcaactgttggtc 384

                                                                       
Query: 185 aaccatagattgtcctcttgttttccccatgcaattgatacaagaagggaacttccttta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaccatagattgtcctcttgttttccccatgcaattgatacaagaagggaacttccttta 444

                                                                     
Query: 245 tgcaagcttttgaaacacggttctaaagagtgttgtgttaacttataagtgcacatga 302
           |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 445 tgcaagcttttgaaacacggttctaaagagtgttctgttaacttagaagtgcacatga 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)