BAC Information

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BAC

Clone NameMSMg01-212D15
Chromosome2 (Build37)
Map Location 177,542,142 - 177,542,425
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039123, LOC626877, LOC100039156, LOC100039166, 6230416C02Rik, LOC635470, LOC100043403, LOC100039198, LOC100043406, LOC668066, LOC621442, LOC628308, OTTMUSG00000016571, LOC100039233, LOC626802
Downstream geneLOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212D15.T7 (MSMg01no212_d15.b1)MSMg01-212D15.TJ (MSMg01no212_d15.g1)
ACCAG393662
length719721
length of high quality
(start - end)
---283 (82 - 364)
definitionCHROMAT_FILE: MSMg01no212_d15.b1 PHD_FILE: MSMg01no212_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:55 2005CHROMAT_FILE: MSMg01no212_d15.g1 PHD_FILE: MSMg01no212_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:56 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXX
NTTAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTAAGGAATACCGAA
TGGTTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAATTCAGGTGACAGCAGGTGCTGGCAAGGATGTGGAGAAA
GAGGAACTGCAGATGTTAATTGTATTACCAATTCAAGGCAATTCCACTTT
TGTAATAGTTATGGTTCATCTTAGCCTATAGTTTGACTCCAAAGTTTCTC
TGGTTTTACTCACATTTGATTATCTCTCCGACCCTCAGAGGAGACTTTGA
GATTGGCCTGGAAATAGAATGACCCCCCACTTCATATCTTTTAGATTGTT
GCTTCCTGGTTCTTGACAGTGTAACTGTATCTACCCTTTAAAAAACTAAG
CCTATTTGAGATGGTTTATATTCCAGAAGAGACTATGTAGACGAGTGTGG
CCTCAAATTCATGAATATGAATTTGCCTCCACACTTCTGGGATTGATAGC
ACATACTATCATGCTTTGCGATATTCATTTTGAAAATGATTGTAAGGCAC
TGATTCTAAACACCTGAAATGACTTTAAGACTTAGTGTATTGTCCCAATT
CTTAGGTGCTGTCTTTAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_d15.g1 MSMg01no212_d15.g1 CHROMAT_FILE:
MSMg01no212_d15.g1 PHD_FILE: MSMg01no212_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:56 2005
         (283 letters)



>mm_chr2_177541766_177542449
          Length = 684

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%), Gaps = 1/284 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacctaaggaataccgaatggttgagaagcacctgaaaaaatgttcagcatccttaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tcacctaaggaataccgaatggttgagaagcacctgaaaaaatgttcagcatccttaatc 601

                                                                       
Query: 61  atcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 atcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggct 541

                                                                       
Query: 121 aagatcaaaaattcaggtgacagcaggtgctggcaaggatgtggagaaagaggaactgca 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 540 aagatcaaaaattcaggtgacagcaggtgctggcgaggatgtggagaaagaggaactgca 481

                                                                       
Query: 181 gatgttaattgtattaccaatt-caaggcaattccacttttgtaatagttatggttcatc 239
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 480 gatgttaattgtattaccaattgcaaggcaattccacttttgtaatagttatggttcatc 421

                                                       
Query: 240 ttagcctatagtttgactccaaagtttctctggttttactcaca 283
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttagcctatagtttgactccaaagtttctctggttttactcaca 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 684
Length adjustment: 9
Effective length of query: 274
Effective length of database: 675
Effective search space:   184950
Effective search space used:   184950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)