BAC Information

Click to search

BAC

Clone NameMSMg01-212K02
Chromosome2 (Build37)
Map Location 169,144,254 - 169,279,501
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668952, Nfatc2, Atp9a, Sall4, Zfp64, LOC100043909
Downstream geneEG668954, Tshz2, LOC100043737, LOC100043910, Zfp217, Silg111, LOC100043739, Bcas1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212K02.T7 (MSMg01no212_k02.b1)MSMg01-212K02.TJ (MSMg01no212_k02.g1)
ACCAG393912AG393913
length734719
length of high quality
(start - end)
269 (41 - 309)283 (72 - 354)
definitionCHROMAT_FILE: MSMg01no212_k02.b1 PHD_FILE: MSMg01no212_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:27 2005CHROMAT_FILE: MSMg01no212_k02.g1 PHD_FILE: MSMg01no212_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,144,254 - 169,144,516)(169,279,219 - 169,279,501)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGGACTGTGTAAGAACTGACACAAATAAACAAACAAACACGAGGTGTAC
AGTGACTGGAAAATAACAGCAGAGGTTGACTTCTGGCTTCCACATGCACA
CACATGCACATGCACACACATGCACATGCACACATACATGCACATGCACA
CATACATGCGCACACACATGCATGCACATGCACTCATGCACATACACACA
TGCACATGCACAATGCACACACATACACACTGACCCCACCCCCTCTCTAA
CAAGCTGTAGTGATGGAGGAGATGAGCTAAGCTTGAACATCCAATCTACA
ATATTATTTATAACCCCCACCCTCCCAATTAATCCTGTCGACAGCTTGAT
ATAATTATCCGAAACCCAAAAAATAAACATGCACCTGTTGATAAACCACT
GACCTGTACACCCCCCTCGTGTTTCTACTGCCAAGCAAACCTTCCCATTT
CATGTACATTAACAAACCAACTTCTTGTTCCAGGCCCCCCTATAACCTCT
CCTTCAAATACCCAAGGAATAACCAACCCCGCACCGTATAACCCTCTCTT
TTAATTTTTTATATCCCTAAATTCACCCAATCTAACCCACCAAATAAACC
CATCTCACATATCCCCAATTTTAATTAATCTACCTTAAAAAAAATTACCG
AAACTATAATAAAAACAAACAAAGTACGCTAACN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTCTCTGCTGTTGATGAAGGTAGAACTA
TGCCCGCCTGCCTGCATGCCCAGAGCCCTTGCTTCATTTAGCTTCAGCAT
CCAGAGCACAAAGGCATGCAGGTAGCTTCTTTACTGAGAAGACAGAAGAG
CTCATAATAAGAGAGGGACAAGGAAAGCCAGAGCGGCCAGCACCCACATG
GGTCAATCCTAACAAAAAAAAATGGTACTGATGCAAACTCTTGAGAAGAA
AAAATTTACAGCACTGTCATTTAGGTGGGCCTAATTGGGTATTAAATCCA
AATATTTTTTTGTTCCCCCCGCCCCCCCCATAACCCCCAAATCACTTGTT
ATTTTGTGTTTCGCCACTATTACAAAATAAGAATGACCTAGGTTAGCCTA
GAACCATGCGGCACAGGCCTACCTCGAACACTTGTTTGCTCCCCCTACTT
CTGTCTCCTGCGTACTGGGATTTTGACGTGAACAACCTCTTGTGTCATAT
CTCGATGTGACTCAATATATTTTTTGACCTTGTACCAAACCGCACTTTGC
TGTATATTTCCCCCCCCTCCTCCGCACAAAACAAGTTATTTTTATTTTAC
TCCAGCCTCTGGTCCGTCTCACACCCTCCCATCATTTGTTTTTGCCCTCT
TTATGCCCTCCCCCTCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_k02.b1 MSMg01no212_k02.b1 CHROMAT_FILE:
MSMg01no212_k02.b1 PHD_FILE: MSMg01no212_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:27 2005
         (269 letters)



>mm_chr2_169144050_169144718
          Length = 669

 Score =  509 bits (263), Expect = e-149
 Identities = 263/263 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggactgtgtaagaactgacacaaataaacaaacaaacacgaggtgtacagtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggactgtgtaagaactgacacaaataaacaaacaaacacgaggtgtacagtg 264

                                                                       
Query: 65  actggaaaataacagcagaggttgacttctggcttccacatgcacacacatgcacatgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actggaaaataacagcagaggttgacttctggcttccacatgcacacacatgcacatgca 324

                                                                       
Query: 125 cacacatgcacatgcacacatacatgcacatgcacacatacatgcgcacacacatgcatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacacatgcacatgcacacatacatgcacatgcacacatacatgcgcacacacatgcatg 384

                                                                       
Query: 185 cacatgcactcatgcacatacacacatgcacatgcacaatgcacacacatacacactgac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacatgcactcatgcacatacacacatgcacatgcacaatgcacacacatacacactgac 444

                                  
Query: 245 cccaccccctctctaacaagctg 267
           |||||||||||||||||||||||
Sbjct: 445 cccaccccctctctaacaagctg 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no212_k02.g1 MSMg01no212_k02.g1 CHROMAT_FILE:
MSMg01no212_k02.g1 PHD_FILE: MSMg01no212_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:27 2005
         (283 letters)



>mm_chr2_169279019_169279701
          Length = 683

 Score =  532 bits (275), Expect = e-155
 Identities = 281/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctctgctgttgatgaaggtagaactatgcccgcctgcctgcatgcccagagcccttg 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 483 tttctctgctgttgatgaaggtggaactatgcccgcctgcctgcatgcccagagcccttg 424

                                                                       
Query: 61  cttcatttagcttcagcatccagagcacaaaggcatgcaggtagcttctttactgagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cttcatttagcttcagcatccagagcacaaaggcatgcaggtagcttctttactgagaag 364

                                                                       
Query: 121 acagaagagctcataataagagagggacaaggaaagccagagcggccagcacccacatgg 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 363 acagaagagctcataataagagagggacaaggaaagccagagtggccagcacccacatgg 304

                                                                       
Query: 181 gtcaatcctaacaaaaaaaaatggtactgatgcaaactcttgagaagaaaaaatttacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gtcaatcctaacaaaaaaaaatggtactgatgcaaactcttgagaagaaaaaatttacag 244

                                                      
Query: 241 cactgtcatttaggtgggcctaattgggtattaaatccaaata 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cactgtcatttaggtgggcctaattgggtattaaatccaaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)