XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTGCCCTTATGCAAGCACTCAAGAGAACTAATTTGCTCTTTCTACGGTA
TGAAGATACTACAAAAGGTACCATTGATAAAACTATAAATGGATCCAGTT
CAGAAAACACATCAACCAACTGTTTAGTTTTTAACTTCTCATATTAGAGA
CATTTTATATCACAAAACATTTTACTTATGAGTTAAAATTTTGTTTTGTA
GCTGCCATAATAGTTTAAGACTTTGGTGAATATTTCATACCTTTCAATTA
TATCATACATGGTTTACATTCTCTAAATATAAGAATAGAGGTTTAGTCAC
ACTATATTTATATTACTCTTTTATGCATTCAGACTAATTTCATATTTTAT
ATTGTAAATCAATTATAAACCACCGCATACTTTTAAAAAGATTAAATTCA
CAGAATTCAGAACAAGTGTTTATGCCTAATCTGGGTTAAAAAATGTTTCA
ACAAATATATATATATATGTGTGTGTGTGTGTGTCTGTGTGTGACAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATCCCTT
TTTCCCTCCCCCCCTCCACATATTCTTCGCCTCTTTATTGTCTCCCTAGG
GCCTCCCTTTTCTTTTCCCCTTTTTTTTCTTTTTTCCCCCTTTTCCCCCC
TTCTACCCGTTCTCTTTGTTTCCCCTTCCCCTTTTTG

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGACTTCTCCATTACGTTTAACATTAAAG
GGTGTTGTATTTTGACAAATGCCTTTTCAGCATCAAGGAAGATGACCATG
TGATTTTTTTTTCTTTGAGTTTGTTTATATAGTGGATTACATTAATGGAA
TTTTGCATATTAAACCAACCTTGTATCTTGAGATGAAGCCTACTTGATCA
TGGTGAATGATGGTTTTGATGTGTAGTTGGATTTGTTTTACTTCCCCTTC
TTCTTCTCTTTCCCTCTCCCTTTTTTTTCCTTTCTTTCCCCCCCCCCTCC
TCCCATCTTTCTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCTTCTCTCT
TCCTTTTTTTTTCCTTTTCCTTTCTTTTTTGTCCCCCCCCCCCAAAAAAA
CATTTTTTTTCCTTTTCCCGTCCGTTTCCCTTCCTTTTTCCCCACCCTAT
TTTCTCCCTTCCCCTTTCCTTTCCTTTCCTTCCCGTCTCTCCTTTTATTC
CCTCCCCTCAACCCCTATCTCATATCCCCCTTATTTTCCCCTCCCCCCCC
CCTCTCTTCCTTTTTTATCACTCTTTTTTTTTCCCCTTCTCCCCCTCCCC
CTCCTTTACCCCTCTTGCCTCCCCTTCTTTTCCTTTTTTTCTGCCTTCCC
CTTTTCTTTTTCCCCCCCCCTTCCCCCCTTTTCCTTCCCCCTCTTTTCTC
CCCCCTCCTTTTTTTCCTTTTCTGACCTTTCCTCTTCCTTTCCCCGTCCC
CTTGTCCCTTTCTCGCCCCTCTTTTTCCTTTTTTTG

Query= MSMg01no213_b05.b1 MSMg01no213_b05.b1 CHROMAT_FILE:
MSMg01no213_b05.b1 PHD_FILE: MSMg01no213_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:01 2005
         (525 letters)



>mm_chr2_98051758_98052682
          Length = 925

 Score =  888 bits (459), Expect = 0.0
 Identities = 489/499 (97%), Gaps = 1/499 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgcccttatgcaagcactcaagagaactaatttgctctttctacggtatgaa 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcactgcccttatg-aagcactcaagagaactaatttgctctttctacggtatgaa 264

                                                                       
Query: 65  gatactacaaaaggtaccattgataaaactataaatggatccagttcagaaaacacatca 124
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 gatactacaaaaggtaccattgataaaactataaatggatccatttcagaaaacacatca 324

                                                                       
Query: 125 accaactgtttagtttttaacttctcatattagagacattttatatcacaaaacatttta 184
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 325 accaactgtttagtttttaacttctcatattagagatattttatatcacaaaacatttta 384

                                                                       
Query: 185 cttatgagttaaaattttgttttgtagctgccataatagtttaagactttggtgaatatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttatgagttaaaattttgttttgtagctgccataatagtttaagactttggtgaatatt 444

                                                                       
Query: 245 tcatacctttcaattatatcatacatggtttacattctctaaatataagaatagaggttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcatacctttcaattatatcatacatggtttacattctctaaatataagaatagaggttt 504

                                                                       
Query: 305 agtcacactatatttatattactcttttatgcattcagactaatttcatattttatattg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtcacactatatttatattactcttttatgcattcagactaatttcatattttatattg 564

                                                                       
Query: 365 taaatcaattataaaccaccgcatacttttaaaaagattaaattcacagaattcagaaca 424
           ||||||| |||||||| |  | ||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaatcagttataaactagtgtatacttttaaaaagattaaattcacagaattcagaaca 624

                                                                       
Query: 425 agtgtttatgcctaatctgggttaaaaaatgtttcaacaaatatatatatatatgtgtgt 484
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatgtttatgcctaatctgggttaaaaaatgtttcaacaaatatatatatatatgtgtgt 684

                              
Query: 485 gtgtgtgtgtctgtgtgtg 503
           |||||||||| ||||||||
Sbjct: 685 gtgtgtgtgtgtgtgtgtg 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)