BAC Information

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BAC

Clone NameMSMg01-213F05
Chromosome2 (Build37)
Map Location 119,374,620 - 119,443,578
singlet/doubletdoublet
Overlap gene1500003O03Rik, LOC100043307, Oip5
Upstream geneBmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1
Downstream geneNusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213F05.T7 (MSMg01no213_f05.b1)MSMg01-213F05.TJ (MSMg01no213_f05.g1)
ACCAG394360AG394361
length733725
length of high quality
(start - end)		478 (40 - 517)294 (71 - 364)
definitionCHROMAT_FILE: MSMg01no213_f05.b1 PHD_FILE: MSMg01no213_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:19 2005CHROMAT_FILE: MSMg01no213_f05.g1 PHD_FILE: MSMg01no213_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,443,117 - 119,443,578)(119,374,620 - 119,374,913)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TGAGGTGGCGCTCTCTATATATTTCCCGATTTAATGACAGTGAAGAGTAT
GTAACTGTTGTAAACAACAAAGAAACTTTGTCTTGTGACATGTTTACGCT
CTCCATAGAGTATGTTTGAGTTGTAAACTCTTTACCGGTTTGAATCATAT
AAACATGGCATTGGTGAAAGTTAAAGTTGGATGTAGGTTTTAAGGTCTGT
GAGAGAACTAGGACTATTAGTTATTAGTTATTAGTTATTAGTTATAATTT
CTCAGGGTTGGTAGCAAATACCTTTACCCACCGAGTCATTTCACTGGCCC
TGAAGTGACATTTTTGATATAGCTACAAATTATTTTACTTTTGATATTGG
TAATAAAGGTCTTTCCCCCAACTTACAATTCTGCCTCTGCCTGCAAGTGC
TGGGATCACAAGCATGGGAACCTGCACCCAACCTCTTTTTTTTGTTTTTT
TTGTTTTTGAGACAGGGTTTCTCTGTATAGNCCTGGCTGTCTTGTCACTC
ACTTTGTACATCATTTTTGGACTTGAACTCATAAATCTGCCTGCCTCTGC
CTCCCAAGTGCTGGGATTTAAGGAATGCGTCACCACTGCCTGTGTACACT
TTTTTTTTAAAAACTCTGTATAACATTTTTCATTATTACCCCCGTTTGTC
GTTAGCTATTTACTTCCCACTCCCCCCTTTTTT

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCAGGAATGAGTCCTTGGGTAAATGACAA
GTTGTTCTGGCTGTCTGACCAGTTAAACTTTCTAGAGTATTCAGGTTGAA
AGAGATGTGGTCTAGCCCCACCCCCTGTCAGGTTGCTTTGCTTTTAATCC
CTTACTAATATGTGGCCAATTTTGAGTGAATGACAGAGAATACTTAGCTT
TTTATAGAGTTTGGCCAGTCACGCTTAAGGATTCCATGAGTAAAAATGCA
CACAGTTGGATTTAGCAAGCTTTTACCTCTGACCCTACTTGTAAATGTAA
TGACTTCTCTCTGATTATGCTTAAAGCCCAGAGTCACGTCATGGGGAAGT
ATAGTGAGTATGGAGCACCCCATTGTTTTGTTTTCTTTTGTTTTTTGATA
CAAGATCTTACCTTGTAGCCCAGACTTGCTTAGAATTCACTACATAAACT
GGGCCTGGTGGTGTCCATACCTTTAATCCCAACACTCCAAAGGGAGCAGA
ATTTGAGATCAGCCTGATCTACATAACAGGCTCCAAGATAGCTAGGGCTA
CAGAGGGAAACTCTGTCATGAATAACAAAATACAATACAAATTTAGACCA
ACAGAATAATTCACTACATAGCCTAGGCTGGTTTCAAACTCATGACAGTC
CTCTTGCTTCAGCCCCTCCCAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_f05.b1 MSMg01no213_f05.b1 CHROMAT_FILE:
MSMg01no213_f05.b1 PHD_FILE: MSMg01no213_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:19 2005
         (478 letters)



>mm_chr2_119443117_119443994
          Length = 878

 Score =  847 bits (438), Expect = 0.0
 Identities = 456/462 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgaggtggcgctctctatatatttcccgatttaatgacagtgaagagtatgta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gaattcctgaggtggcgctctctatatatttcccgatttaatgacagtgaagagtatgta 403

                                                                       
Query: 65  actgttgtaaacaacaaagaaactttgtcttgtgacatgtttacgctctccatagagtat 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 actgttgtaaacaagaaagaaactttgtcttgtgacatgtttacgctctccatagagtat 343

                                                                       
Query: 125 gtttgagttgtaaactctttaccggtttgaatcatataaacatggcattggtgaaagtta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gtttgagttgtaaactctttaccggtttgaatcatataaacatggcattggtgaaagtta 283

                                                                       
Query: 185 aagttggatgtaggttttaaggtctgtgagagaactaggactattagttattagttatta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aagttggatgtaggttttaaggtctgtgagagaactaggactattagttattagttatta 223

                                                                       
Query: 245 gttattagttataatttctcagggttggtagcaaatacctttacccaccgagtcatttca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gttattagttataatttctcagggttggtagcaaatacctttacccaccgagtcatttca 163

                                                                       
Query: 305 ctggccctgaagtgacatttttgatatagctacaaattattttacttttgatattggtaa 364
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 162 ctggccctgaagtgacatttttgatatagttacaaattattttacttttgatattggtaa 103

                                                                       
Query: 365 taaaggtctttcccccaacttacaattctgcctctgcctgcaagtgctgggatcacaagc 424
           |||||||||||||   || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 taaaggtctttccttgaatttacaattctgcctctgcctgcaagtgctgggatcacaagc 43

                                                     
Query: 425 atgggaacctgcacccaacctcttttttttgttttttttgtt 466
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  atgggaacctgcacccaacctcttttttttgttttttttgtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no213_f05.g1 MSMg01no213_f05.g1 CHROMAT_FILE:
MSMg01no213_f05.g1 PHD_FILE: MSMg01no213_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:19 2005
         (294 letters)



>mm_chr2_119374420_119375113
          Length = 694

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccaggaatgagtccttgggtaaatgacaagttgttctggctgtctgaccagttaaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tccaggaatgagtccttgggtaaatgacaagttgttctggctgtctgacaagttaaactt 260

                                                                       
Query: 61  tctagagtattcaggttgaaagagatgtggtctagccccaccccctgtcaggttgctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctagagtattcaggttgaaagagatgtggtctagccccaccccctgtcaggttgctttg 320

                                                                       
Query: 121 cttttaatcccttactaatatgtggccaattttgagtgaatgacagagaatacttagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttaatcccttactaatatgtggccaattttgagtgaatgacagagaatacttagctt 380

                                                                       
Query: 181 tttatagagtttggccagtcacgcttaaggattccatgagtaaaaatgcacacagttgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatagagtttggccagtcacgcttaaggattccatgagtaaaaatgcacacagttgga 440

                                                                 
Query: 241 tttagcaagcttttacctctgaccctacttgtaaatgtaatgacttctctctga 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttagcaagcttttacctctgaccctacttgtaaatgtaatgacttctctctga 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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