BAC Information

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BAC

Clone NameMSMg01-214B16
Chromosome2 (Build37)
Map Location 177,849,985 - 177,961,509
singlet/doubletdoublet
Overlap genePhactr3
Upstream gene6230416C02Rik, LOC635470, LOC100043403, LOC100039198, LOC100043406, LOC668066, LOC621442, LOC628308, OTTMUSG00000016571, LOC100039233, LOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik
Downstream geneSycp2, Ppp1r3d, 9030418K01Rik, Cdh26, LOC100039368, LOC665264, LOC100043168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214B16.T7 (MSMg01no214_b16.b1)MSMg01-214B16.TJ (MSMg01no214_b16.g1)
ACCAG394872AG394873
length719730
length of high quality
(start - end)
234 (110 - 343)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no214_b16.b1 PHD_FILE: MSMg01no214_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:19 2005CHROMAT_FILE: MSMg01no214_b16.g1 PHD_FILE: MSMg01no214_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(177,849,985 - 177,850,216)(177,961,231 - 177,961,509)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
TTCGTGAACTGCCATGTGGATGCTGGGAACTGAACCCAGTTCTCTGAAAG
AGTTTTCACCGCTCTTAACTGCTGAAGCATCTCTCCAGGCCCAGAGCTGA
CAACTAATACACAGAGATCTTCAATCTTGACCCCTGTTTCAGCACCCTGG
AGCACGTCCTAATCACCTTCCAGATAGCAGCAGGGCCATTACATATGAAG
CACACCTTGATTGGCCACGCTTCTGTCAGATGTGCTTAATCAATCACAGC
ACATTGTTACTGACACTCGAGACAGCCCAGTGGCCCTGCTGATTTCTTTA
GGCCACTGCCCACCACTGGAGAAAGAGAACTGTGGGTGGCCACACTATGA
CATACACACGATAGACACTGATGCAGATGTTTCCATGTACCAAGCCTGAT
TTGCCACAACATAGATCAACAACCACTCCAGTGTCCACCCTAAACCTCCA
AGTGGACTGTTGGTCCTTATCCCAGCTGGTGCCCGTGATACAGAAAGAAG
CTGAAGAAACTCCCAGCACAGACTGAGGTAATGGACTTGGGAGGGTATGT
GTGTACACAGGTACTTATACAGGTATTGACATCTTGCCATACCCTGCTTC
ATCATCTGTTGGGGTTCTCGTAGCACCAGACTTACAGCCCCACAGCTGTA
GATGTCCGTGACCTAGATT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAGTGCCCATCATGGTGAGGCCA
TTGGCTCTACCTCTGGATAACGGGAAGAACTCTCTGTGAAGGTAAGGGCT
GAGGACAGTGTCTAGGTCTGGGAAAACTTCCCAGAAGAGGTGATTCTAGT
TATACAGTGGAAAGAAAGACAAGAACGCAGACAGGGGAAGCTTGTTCCAG
GAAAGAGAAGGGACATCGGTGTTTCATACCAGGGAATCAACAAACAGAGG
CACAGCATGAAGTCACAGGTGATGGGACCAGGGCAGGAAGCACCCACACA
CCTTTTTGGGCTACCNGCNANACCTGTGCCTAAGCCTTAACTCTAGGGTC
ATCACCACAAAAGAACAACCAAGAAAAAAAAAACAGTTCGGGTACTTAGT
GAGTGATGGAAGACAGAGGTATTGTTCTAAGTCCATGCTGCCAGAGGCGT
TTCTGCCGTTGTTACTGGTGTGATTGATGAGCATTTTAATAATGTCCTTA
GCTGAGATCCACATCACTGCCTGTTGACACTGGCATTCTAGAGGGTAGAA
AGCATAAGCCATATAGTATTAAATAGGATTCATTTGATGTTTCCTGGATA
TGGGCTAGCCTCCCTACAAGTTCCCTGAAAACTGTCGCCCAAGCTCACCC
TCTCTCTCTTCTATGGGCCTGTGCCCACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_b16.b1 MSMg01no214_b16.b1 CHROMAT_FILE:
MSMg01no214_b16.b1 PHD_FILE: MSMg01no214_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:19 2005
         (234 letters)



>mm_chr2_177849784_177850417
          Length = 634

 Score =  441 bits (228), Expect = e-128
 Identities = 231/232 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   gctcttaactgctgaagcatctctccaggcccagagctgacaactaatacacagagatct 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gctcttaactgctgaagcatctctccaggcccagagctgacaactaatacacagagatct 261

                                                                       
Query: 62  tcaatcttgacccctgtttcagcaccctggagcacgtcctaatcaccttccagatagcag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcaatcttgacccctgtttcagcaccctggagcacgtcctaatcaccttccagatagcag 321

                                                                       
Query: 122 cagggccattacatatgaagcacaccttgattggccacgcttctgtcagatgtgcttaat 181
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cagggccattacatatgaagctcaccttgattggccacgcttctgtcagatgtgcttaat 381

                                                               
Query: 182 caatcacagcacattgttactgacactcgagacagcccagtggccctgctga 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 caatcacagcacattgttactgacactcgagacagcccagtggccctgctga 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no214_b16.g1 MSMg01no214_b16.g1 CHROMAT_FILE:
MSMg01no214_b16.g1 PHD_FILE: MSMg01no214_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:19 2005
         (282 letters)



>mm_chr2_177961031_177961712
          Length = 682

 Score =  509 bits (263), Expect = e-148
 Identities = 275/279 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagtgcccatcatggtgaggccattggctctacctctggataacgggaagaactctctg 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttagtgcccatcatggtggggccattggctctacctctggataacgggaagaactctctg 420

                                                                       
Query: 61  tgaaggtaagggctgaggacagtgtctaggtctgggaaaacttcccagaagaggtgattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgaaggtaagggctgaggacagtgtctaggtctgggaaaacttcccagaagaggtgattc 360

                                                                       
Query: 121 tagttatacagtggaaagaaagacaagaacgcagacaggggaagcttgttccaggaaaga 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 359 tagttatacagtggaaagaaagacaagaacgcagacagggaaagcttgttccaggaaaga 300

                                                                       
Query: 181 gaagggacatcggtgtttcataccagggaatcaacaaacagaggcacagcatgaagtcac 240
           |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 299 gaagggacatcggtgttttataccagggaatcaacaaacaaaggcacagcatgaagtcac 240

                                                  
Query: 241 aggtgatgggaccagggcaggaagcacccacacaccttt 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aggtgatgggaccagggcaggaagcacccacacaccttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)