Query= MSMg01no214_d13.b1 MSMg01no214_d13.b1 CHROMAT_FILE:
MSMg01no214_d13.b1 PHD_FILE: MSMg01no214_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:28 2005
(692 letters)
>mm_chr2_83553015_83554106
Length = 1092
Score = 1087 bits (562), Expect = 0.0
Identities = 639/690 (92%), Gaps = 42/690 (6%)
Strand = Plus / Plus
Query: 8 ttcaaattccaccaaccacgtggtggctcacaaccatctgtacagctacagtgtgctcat 67
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ttcaaattccagcaaccacgtggtggctcacaaccatctgtacagctacagtgtgctcat 263
Query: 68 atacat------aacctaaataaatctttaaaaaaaattgtcctcaagacatattcctga 121
|||||| || |||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 264 atacataaaataaa--taaataaatcttgaaaaaaaaatgtcctcaagacatattcctga 321
Query: 122 ctctagccaaacctcataaagagaaatacaccagaacttccaagtttttgaagatgaact 181
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctctagccaaacctcagaaagagaaatacaccagaacttccaagtttttgaagatgaact 381
Query: 182 acacagaggcagtggttatttggcttccactagaaacgttaggaaaaataaattatttca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acacagaggcagtggttatttggcttccactagaaacgttaggaaaaataaattatttca 441
Query: 242 gacccatggaaaagtatgttccaacaagcatgatgttacagatagagatttccaaacctg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gacccatggaaaagtatgttccaacaagcatgatgttacagatagagatttccaaacctg 501
Query: 302 gaaaatatttagaataaatgtactgcttctcgcagttgcttggaaagcacaacgggaggt 361
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 502 gaaaatatttagaagaaatgtactgtttctcgcagttgcttggaaagcacaacgggaggt 561
Query: 362 ggacgcatgggaggggcttgctggggaagcgcagacacatgggaggggcttgctggggaa 421
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 562 ggacgcatgggaggggcttgctggggaagagcatacacatgggaggggcttgctggggaa 621
Query: 422 gagcagacacgtgggaggggcttgctggggaagagcagacacgtgggaggggcttgctgg 481
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 622 gagcagacacgtgggaggggcttgctggggaggagcagacacgtgggaggggcttgctgg 681
Query: 482 ggaggagcagacacgtgggaggggcttgctggggaggagcagacacgtgggaggggcttg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ggaggagcagacacgtgggaggggcttgctggggaggagcagacacgtgggaggggcttg 741
Query: 542 ctggggaggagcagacacatgggaggggcttgctggggaggagcagacacatgggagggg 601
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ctggggaggagcagacacatgggaggggcttgctggggaggagcagacaca--------- 792
Query: 602 cttgctggggaggagcaagacacaagattacactgaaaagaaaagaatatgagttggggg 661
||||||||||||||||||||||||||||||||||||
Sbjct: 793 ------------------------agattacactgaaaagaaaagaatatgagttggggg 828
Query: 662 ggcggggggggacgtggcttgtacctgtct 691
|||||||||| |||||||||||||||||||
Sbjct: 829 ggcggggggg-acgtggcttgtacctgtct 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no214_d13.g1 MSMg01no214_d13.g1 CHROMAT_FILE:
MSMg01no214_d13.g1 PHD_FILE: MSMg01no214_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:28 2005
(235 letters)
>mm_chr2_83626710_83627343
Length = 634
Score = 369 bits (191), Expect = e-107
Identities = 221/231 (95%), Gaps = 1/231 (0%)
Strand = Plus / Minus
Query: 5 tctatatataatcctatatgagtgatcctatagctattgggtttttgtatctccttattg 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 434 tctatatataatcctatatgagtgatcctatagctattgggtttttgtatctccttatgg 375
Query: 65 caggtttgttacatatgtctaagaattatgtttttttttaaatccaagttttcctatata 124
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 374 caggtttgttacatatgtctaagaattatg-ttttttttaaatccaagttttcctatata 316
Query: 125 ttgattagttaagaaattttataatttaagactaaattttatctattcttatatcccttt 184
|||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 315 ttgattagttaagaaactttataatttaagtcgaaattttatctattcttatatcccttt 256
Query: 185 ttattataaattttatgcaaatgctttttcatttttttatttttgtcagac 235
|||||| |||||||||| |||||||||||| |||||||| ||||||||||
Sbjct: 255 ttattacaaattttatgtaaatgctttttcgtttttttaaatttgtcagac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 634
Length adjustment: 9
Effective length of query: 226
Effective length of database: 625
Effective search space: 141250
Effective search space used: 141250
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
