BAC Information

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BAC

Clone NameMSMg01-214F10
Chromosome2 (Build37)
Map Location 69,964,147 - 69,974,135
singlet/doubletdoublet
Overlap geneMyo3b
Upstream geneNostrin, Spc25, G6pc2, Abcb11, Dhrs9, Lrp2, Bbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650
Downstream geneLOC100040021, Sp5, 4933404M02Rik, LOC100040068, Gad1, LOC100039766, Gorasp2, Tlk1, Mettl8, 4833418A01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214F10.T7 (MSMg01no214_f10.b1)MSMg01-214F10.TJ (MSMg01no214_f10.g1)
ACCAG395023AG395024
length724727
length of high quality
(start - end)		343 (374 - 716)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no214_f10.b1 PHD_FILE: MSMg01no214_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:37 2005CHROMAT_FILE: MSMg01no214_f10.g1 PHD_FILE: MSMg01no214_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,973,794 - 69,974,135)(69,964,147 - 69,964,426)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTATGACTGATGGCCAGGCATGGGTGTCTTTTAAAGCTCATAGG
ACTGAGGACCCTGTCCTGCCTGGCTTGCCATGGCAGTGGCTGGTCCTATC
CTGCAGTGGGTGGTACTGTCAATCTTGTCTATTGAGCACTTACAGACTGT
ATCAAGGGTGCTGGGGGATACTGTGCAGGCTCCTGTATCTCAGTGCAAAA
GTGTTCTCACTCATGAGCCATGCCTGGTTTTGTTCCTTCAAGTGGTGACA
ATGAAATGGTGGCAATGGAGCCAACTCCAGGTGTCTAGATCCCAGCAGGA
AATCTGTTTGGGCCTTGCTGCCGCTAGTCTCCCATGTGCCTGTTCGAGTA
TAGAGACCCAGAATGAAGCGTCATTCCAGTCAACCAGGACAGCCAATACA
GGAGGGAGAACCAAGATCTTTAGAATTCCCACCTGTTAGCAACATACCAC
CTACCCTTCATTTAAGTGTGACACCAATGTCCTCCAACTGATGGGACATT
TGCAAATGGCCCAGCAGGAAAGACCACCAGTAAAGTCCTCCTCGGCCTCT
AGGGTGCTCTCTATCCAGGATGGTGACATGACATACATTATCTATATGTC
TCAAGACACTCTTCTTCATGAGTAAGAAGCCAGCACAACCTCCACTCTTT
AGCCTGCATTTTTTCCCATTTGCN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGTTCTTCACCCACTAGCAAGCC
TGCAGCCATTTCTAATCTCCCTGCTCTCTACCCAGTTAGGCCAGAAAATG
CAGTGGCACCCACAAACTGTTGTTGAGGTTGTGTGATGTTGGGGAGGGCT
CTGACGTTGTTGGTAAAAGGGAAACTGTAGGATGGGGTGGCTCCTGCTTT
TCATAACCGTAGGGTCTTCCAACATCAGTCTGCTCGGTGGGTTGCACTCC
CGAGGACTCTGTGTCAGCCACTCTTAAGAGCAACTGTTTTTTGGGGTTTA
AATTTATCTTCATGCTGCCCACCCACCGTTCGAATACCAAGTTTTTCTTT
AAAGGGGAACGAAAAGCAGACACTTTGACGACAGAGTGGCCCCTCTCCCA
TACACTACCTCGTGATGTGCTTTGTACTGAGATGGTTCAACATATGGTTT
CTGAGTGGAGCTAACACAGTTTAAAAAGGAAGAGAATCCATCTGTAATCC
TAGCACGCGTGACGTGACGGTCACATGAGAACGGAAGAAATGAACATGCA
AAGGCACGTCTTGTGAATTTGAGACCAGCCTCAGCAACATCGTCAGACCC
CAGTTCAAAGGAAAGGAGAAGGACCTAAGTTAGTAAACATATCAGATGAT
GAATCGGTTATGCACAGCCTACAAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_f10.b1 MSMg01no214_f10.b1 CHROMAT_FILE:
MSMg01no214_f10.b1 PHD_FILE: MSMg01no214_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:37 2005
         (343 letters)



>mm_chr2_69973593_69974335
          Length = 743

 Score =  623 bits (322), Expect = 0.0
 Identities = 337/342 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   tagtctcccatgtgcctgttcgagtatagagacccagaatgaagcgtcattccagtcaac 61
           ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 543 tagtctcccatgtgcctgttcgagtatagagacccagaacgaagcatcattccagtcaac 484

                                                                       
Query: 62  caggacagccaatacaggagggagaaccaagatctttagaattcccacctgttagcaaca 121
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 483 caggacagccaatacaggagggagaaccaagatctttagaattcccacctgttaacaaca 424

                                                                       
Query: 122 taccacctacccttcatttaagtgtgacaccaatgtcctccaactgatgggacatttgca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 taccacctacccttcatttaagtgtgacaccaatgtcctccaactgatgggacatttgca 364

                                                                       
Query: 182 aatggcccagcaggaaagaccaccagtaaagtcctcctcggcctctagggtgctctctat 241
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aatggcccagcagaaaagaccaccagtaaagtcctcctcggcctctagggtgctctctat 304

                                                                       
Query: 242 ccaggatggtgacatgacatacattatctatatgtctcaagacactcttcttcatgagta 301
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 303 ccaggatggtgacatgacatacattatctatatgtctcaagacactcttcttcaggagta 244

                                                     
Query: 302 agaagccagcacaacctccactctttagcctgcattttttcc 343
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agaagccagcacaacctccactctttagcctgcattttttcc 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no214_f10.g1 MSMg01no214_f10.g1 CHROMAT_FILE:
MSMg01no214_f10.g1 PHD_FILE: MSMg01no214_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:37 2005
         (282 letters)



>mm_chr2_69963947_69964628
          Length = 682

 Score =  518 bits (268), Expect = e-151
 Identities = 277/280 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgttcttcacccactagcaagcctgcagccatttctaatctccctgctctctacccagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgttcttcacccactagcaagcctgcagccatttctaatctccctgctctctacccagt 260

                                                                       
Query: 61  taggccagaaaatgcagtggcacccacaaactgttgttgaggttgtgtgatgttggggag 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 taggccagaaaatgcagtggcacccacaaactgttgttgaggttgtttgatgttggggag 320

                                                                       
Query: 121 ggctctgacgttgttggtaaaagggaaactgtaggatggggtggctcctgcttttcataa 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctctgacgttgttggtaagagggaaactgtaggatggggtggctcctgcttttcataa 380

                                                                       
Query: 181 ccgtagggtcttccaacatcagtctgctcggtgggttgcactcccgaggactctgtgtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgtagggtcttccaacatcagtctgctcggtgggttgcactcccgaggactctgtgtca 440

                                                   
Query: 241 gccactcttaagagcaactgttttttggggtttaaattta 280
           ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 gccactcttaagagcaactgtttttgggggtttaaattta 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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