BAC Information

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BAC

Clone NameMSMg01-214M18
Chromosome2 (Build37)
Map Location 133,375,990 - 133,518,998
singlet/doubletdoublet
Overlap geneBmp2
Upstream genePrei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785, A430048G15Rik
Downstream geneHao1, Txndc13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214M18.T7 (MSMg01no214_m18.b1)MSMg01-214M18.TJ (MSMg01no214_m18.g1)
ACCAG395291AG395292
length732731
length of high quality
(start - end)
320 (46 - 365)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no214_m18.b1 PHD_FILE: MSMg01no214_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:14 2005CHROMAT_FILE: MSMg01no214_m18.g1 PHD_FILE: MSMg01no214_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,518,684 - 133,518,998)(133,375,990 - 133,376,278)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCTCATCACCAACCTTAATCACTTTTGTTCCTAGAAAAAAATT
ATCAAATGCAGTCGTGGTGGCCAAGATAAATATGTATGTAAGCACCACAA
GGAGTACACTTCACCAGGGAGGGAAAATATTGGAACATTTGAAAACATCT
GCAAGCATGAAATGAGAAATTACCAGATCAAAGAGGAGTCTAGTTACAAG
GTCAGCTAAGCAATTAATAGTAGAAGAGAAAGAGTCTCATAGAAACTCAG
AAGTATTCATTATTCCTTCCTGTGTGGAAACAGCAGGGTCCATGTTTAAA
AACAAGGCAAAGATANATAACTACCCANTACTTCCCAATAAAGCAAGCTG
GCATACAATGACCTGACACCCCCACACATCAGAATACCAAAGATTATTCA
GGAGGATTGGTGACTCGCAGGAAACCAGGAACCAGGGCTCTTAATGGCAT
TTGGTGGGAGTCTGGCAATCTTCTATGAAGTAATAACCAGAGCATTGTCA
ATAGGTTAACTATGATATTTGGAGAGAACATTCAGGTAGAAATACTTAGA
AACGTTAAGTGAGTCATTTGGAGCATATTTAAAATGCTCTGGGACAGATG
GCAGTCAGTCTGCTCTGGGACAGATGGCAGTCTGCACCTGCAGAAGCAGA
CATGTTAAGGGGTTCATCAAGAGTTTGTTCTN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTAAACTGGATTCACTTCTAGG
TCCCATGCGTTTACACTCATTTCCACCACAAGAGGGCAGCCATCTCTAAA
AAACAACAGTCGAGTGCTCTTCAGAGAAATTGGGCCAAACTTGAGGAAAG
TTCCTGGGAAAGGCTTTTTAGCAGCACCTCTCTGGGCTACAAAAAAGAAG
CCAGCAGGCACCACCAAGGTGGAGTAACTGTCCAGAGGCATCCATTTTAC
CTCGGAGACTTGATTACTAAGGATATCCTAAACGGCCAAACTCTCTCTTC
TGGTGTTCCAGAGGTCTTTTGCTGCCCCCCCCCGCTGATGTCATCACCAA
AGGTTTCATTTTCATCTTTCCCCGCAGATGAACCAACAGCTGTCAGCTTT
CTCTTCCTCATTAAAGGCAACTTTCTCATTTAAATCTCATATAGGTTCGG
AGTTTCTTGCTTTGCTCCTTCCGCCTCCGCGATGACAGAAGCAATGGTTA
ACTTCTCAATTAAACTTGATAGGGAAGGAAATGGCTTCAGAGGCGATCAG
CCCTTTTGACTTACACGTCTGAGTGGAGTGTTTTATTGCCGCCTTGTTTG
GTGTCTCATGATTCAGAGTGACAACTTCTGCAACACGTTTTAAAAAGGAA
TACAGTAGCTGATCGCAAATTGCTGGATCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_m18.b1 MSMg01no214_m18.b1 CHROMAT_FILE:
MSMg01no214_m18.b1 PHD_FILE: MSMg01no214_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:14 2005
         (320 letters)



>mm_chr2_133518481_133519200
          Length = 720

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttctcatcaccaaccttaatcacttttgttcctagaaaaaaattatcaaatg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggaattccttctcatcaccaaccttaatcacttttgttcctagaaaaaaattatcaaatg 459

                                                                       
Query: 64  cagtcgtggtggccaagataaatatgtatgtaagcaccacaaggagtacacttcaccagg 123
           |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 458 cagtcgtggtggccaagataaatatgtatgaaagcaccacaaggagtccacttcaccagg 399

                                                                       
Query: 124 gagggaaaatattggaacatttgaaaacatctgcaagcatgaaatgagaaattaccagat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gagggaaaatattggaacatttgaaaacatctgcaagcatgaaatgagaaattaccagat 339

                                                                       
Query: 184 caaagaggagtctagttacaaggtcagctaagcaattaatagtagaagagaaagagtctc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 caaagaggagtctagttacaaggtcagctaagcaattaatagtagaagagaaagagtctc 279

                                                                       
Query: 244 atagaaactcagaagtattcattattccttcctgtgtggaaacagcagggtccatgttta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 atagaaactcagaagtattcattattccttcctgtgtggaaacagcagggtccatgttta 219

                          
Query: 304 aaaacaaggcaaaga 318
           |||||||||||||||
Sbjct: 218 aaaacaaggcaaaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no214_m18.g1 MSMg01no214_m18.g1 CHROMAT_FILE:
MSMg01no214_m18.g1 PHD_FILE: MSMg01no214_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:14 2005
         (292 letters)



>mm_chr2_133375790_133376482
          Length = 693

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%), Gaps = 1/289 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttaaactggattcacttctaggtcccatgcgtttacactcatttccaccacaagaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttaaactggattcacttctaggtcccatgcgtttacactcatttccaccacaagaggg 260

                                                                       
Query: 61  cagccatctctaaaaaa-caacagtcgagtgctcttcagagaaattgggccaaacttgag 119
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagccatctctaaaaaaacaacagtcgagtgctcttcagagaaattgggccaaacttgag 320

                                                                       
Query: 120 gaaagttcctgggaaaggctttttagcagcacctctctgggctacaaaaaagaagccagc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaagttcctgggaaaggctttttagcagcacctctctgggctacaaaaaagaagccagc 380

                                                                       
Query: 180 aggcaccaccaaggtggagtaactgtccagaggcatccattttacctcggagacttgatt 239
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 aggcaccaccaaggtggagtaactgtccagaggcatccattttacctcagagacttgatt 440

                                                            
Query: 240 actaaggatatcctaaacggccaaactctctcttctggtgttccagagg 288
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actaaggatatcctaaacggccaaactctctcttctggtgttccagagg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 693
Length adjustment: 9
Effective length of query: 283
Effective length of database: 684
Effective search space:   193572
Effective search space used:   193572
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)