BAC Information

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BAC

Clone NameMSMg01-218L12
Chromosome2 (Build37)
Map Location 169,271,943 - 169,272,253
singlet/doubletsinglet
Overlap genenone
Upstream geneNfatc2, Atp9a, Sall4, Zfp64, LOC100043909
Downstream geneEG668954, Tshz2, LOC100043737, LOC100043910, Zfp217, Silg111, LOC100043739, Bcas1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218L12.T7 (MSMg01no218_l12.b1)MSMg01-218L12.TJ (MSMg01no218_l12.g1)
ACCAG397788AG397789
length718733
length of high quality
(start - end)
315 (45 - 359)237 (77 - 313)
definitionCHROMAT_FILE: MSMg01no218_l12.b1 PHD_FILE: MSMg01no218_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:49 2005CHROMAT_FILE: MSMg01no218_l12.g1 PHD_FILE: MSMg01no218_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGATCACACAAGAGGTGATAGATGGAAGACTGGAAGGTACCTTG
AACCCTTGACCATCAGCAAACTACTGTCCCAACCTGGATCTCTGCACATA
AGCAACACGTCTCAATACTGAGTTTCCCTCTAGAAGTTTCTTCTCCAGTT
TCCACCCAAGTCAATTCTCACATCAACATGTTTCAGTCAACCAGGGCATA
ATCCAATCTAGTACTTCATCATCAGAGTCTCAGAAAAATGAACCGACATT
CTGTTGCCATCGTTAGAGGTCATGTATGCTAGAGAAGAAGTCAAGAAACA
AGTACTTTATAGTTACCTACCCCANCCGNTCCCCCTTGTTTCCCTGTAGC
CCCAGCTAGCCTTGAATCCCCGATTCTCCAAAAACCGTCTCCCAAGTGCT
GGGATAAGGGCAGGCATGTTATCATTGCACCCTGCTAAGTCAAAGCTGTT
CTTGAACTGACCCTTCTGTCTCCATCTCCCAAGAGCTCCCTGTATATGCG
TGCCTCATCCCTCCATGAGAAGTAATGCATTCCTTTTCAAAAGGGTGGAG
GGATACTCCCTTGATGGCTAAAAATGTTGGAGGCGAGGTGAAATTTTTCA
TCTTTGATTAGATCCTATATGAGTCAATAATGAATGTAGAAGAGAGTTCC
CGTAAGAACGGCCTTTGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGGACCAGGAGAATGAATGGA
AATATGTGGCTTTCTTTGGCCGGAGGTGGATGGAACTTCTAGAAAGTTTC
AGAGACCTGGGATGTGAGAGACTCCCAGGACTCAATGTGGAGGATGGCCT
TAGCTGAAATGCCCAACAGTGGGGAGATGCAACCTGAAGAGACCAGCTCC
AGCAGTTAGACAGGGCTCCCAATGAAGGGATGTTGACCCAGACTTGTTCC
TGTCTAAAAGAAAGTTTTGTTCAAACATGGAGCAGAGACTGAAGGAAAGG
CAGTTTNCCTCNTTCCCCNAACCCTCCCCCCCATCTCATGGGTGGGCACC
AAACCCGGACTCTACCACAAGAAAAAAAAATGAGCTTGCGGTCGGGAGCC
TAGCATGCCTGTCCTCTGAGAGGCTCTACCAGCAGCTGACTGAGGCAGAT
GGACAAACCGACAGCCAATTATTAGATTGAGGACGGGACCCCTATATATG
AGTTAGGGCAAGGACTGAGGTAGCACCTTCTCACAGGCTCATGGTATGGT
GCATGCTTTGACTTACGCCGCCTTTCCTCCTCTTCATCCTGTTTTTTTTT
TCCCCTTTTCCTCCCCTTTCTCTCTTACCTCTCTTCCCTTCCATCCCTTT
TCTCTTTCTCCCCTTTTCCCTTCCTTTTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_l12.b1 MSMg01no218_l12.b1 CHROMAT_FILE:
MSMg01no218_l12.b1 PHD_FILE: MSMg01no218_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:49 2005
         (315 letters)



>mm_chr2_169271739_169272453
          Length = 715

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaggatcacacaagaggtgatagatggaagactggaaggtaccttgaacccttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattcaaggatcacacaagaggtgatagatggaagactggaaggtaccttgaacccttg 456

                                                                       
Query: 65  accatcagcaaactactgtcccaacctggatctctgcacataagcaacacgtctcaatac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 accatcagcaaactactgtcccaacctggatctctgcacataagcaacacgtctcaatac 396

                                                                       
Query: 125 tgagtttccctctagaagtttcttctccagtttccacccaagtcaattctcacatcaaca 184
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tgaatttccctctagaagtttcttctccagtttccacccaagtcaattctcacatcaaca 336

                                                                       
Query: 185 tgtttcagtcaaccagggcataatccaatctagtacttcatcatcagagtctcagaaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgtttcagtcaaccagggcataatccaatctagtacttcatcatcagagtctcagaaaaa 276

                                                                       
Query: 245 tgaaccgacattctgttgccatcgttagaggtcatgtatgctagagaagaagtcaagaaa 304
           ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 275 tgaaccgacattctgttgccatcgttagaggccaggtatgctagagaagaagtcaagaaa 216

                      
Query: 305 caagtacttta 315
           |||||||||||
Sbjct: 215 caagtacttta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)