Query= MSMg01no231_b05.b1 MSMg01no231_b05.b1 CHROMAT_FILE:
MSMg01no231_b05.b1 PHD_FILE: MSMg01no231_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:16 2005
(679 letters)
>mm_chr2_44623188_44624266
Length = 1079
Score = 1282 bits (663), Expect = 0.0
Identities = 672/675 (99%)
Strand = Plus / Minus
Query: 5 gaattcatatcagttttcctggctggtctggaaaccacagtagttctcataactcagtct 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 879 gaattcatatcagttttcctggctggtctggaaaccacagtagttctcatgactcagtct 820
Query: 65 tccaagtgccatcataacccatttcttaatattaggattgaatcccacgacgagcataga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tccaagtgccatcataacccatttcttaatattaggattgaatcccacgacgagcataga 760
Query: 125 atactagctatctgtttttcataaatccacatctaacattctacgcttactttataatgt 184
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 atactagatatctgtttttcataaatccacatctaacattctacgcttactttataatgt 700
Query: 185 atgccatgtacatcaatcttgaataggaaacagttttattttttaatgtattctgtccct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 atgccatgtacatcaatcttgaataggaaacagttttattttttaatgtattctgtccct 640
Query: 245 tcttccacatcttgtttcttattttcttctgttggatatactcaggcccactgatgcccc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tcttccacatcttgtttcttattttcttctgttggatatactcaggcccactgatgcccc 580
Query: 305 tacctactgggtagggctcatacattaccggagccagttttcaaacccatttgttggtaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tacctactgggtagggctcatacattaccggagccagttttcaaacccatttgttggtaa 520
Query: 365 ttcttggagttgactttatctgtttgcgttcctgattcctttcagttgaacataaattcc 424
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 519 ttcttggagttgactttatctgtttgcgttcctgattcttttcagttgaacataaattcc 460
Query: 425 tcatcctttaaattagagggattaacactagtctttttcttcttgtctctcttcaccttc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tcatcctttaaattagagggattaacactagtctttttcttcttgtctctcttcaccttc 400
Query: 485 agttcccagttgtaactgtctcatccaaatttttgtttttactcttttctcccagaattc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 agttcccagttgtaactgtctcatccaaatttttgtttttactcttttctcccagaattc 340
Query: 545 ccttgctttgttctgtagaccctttctgtgggcttggcacctcttttcttctcaccagtt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ccttgctttgttctgtagaccctttctgtgggcttggcacctcttttcttctcaccagtt 280
Query: 605 taattttgcacattgcttgtgaagtttagtgtatggtacatgtaaagaattttcaaggcc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 taattttgcacattgcttgtgaagtttagtgtatggtacatgtaaagaattttcaaggcc 220
Query: 665 acttcctagattctg 679
|||||||||||||||
Sbjct: 219 acttcctagattctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no231_b05.g1 MSMg01no231_b05.g1 CHROMAT_FILE:
MSMg01no231_b05.g1 PHD_FILE: MSMg01no231_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:16 2005
(572 letters)
>mm_chr2_44522593_44523564
Length = 972
Score = 1031 bits (533), Expect = 0.0
Identities = 562/577 (97%), Gaps = 10/577 (1%)
Strand = Plus / Plus
Query: 1 tgtcactaagaccctaaaagcccatggccatagtgataagaggatcctgcagtaaggtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcactaagaccctaaaagcccatggccatagtgataagaggatcctgcagtaaggtgt 260
Query: 61 caggaaatccaataactgggataaaagaaacagacagggtgaagcataagagtttatgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggaaatccaataactgggataaaagaaacagacagggtgaagcataagagtttatgag 320
Query: 121 gaaagaagcttaaataggtgaaagtctgggagcccaaaaggggtgggggggggcagggtg 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 gaaagaagcttaaataggtgaaagtctgggagcccaaaagggg-----gggggcagggtg 375
Query: 181 gctaaggagggaggcttcaaagagagatcagttatcagctgttaggagctctcacctctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gctaaggagggaggcttcaaagagagatcagttatcagctgttaggagctctcacctctg 435
Query: 241 cacagaggatggaggccatgatccacaagcagggagggggacttaccattgtcattttgc 300
||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 436 cacaggggatgcaggccatgatccacaagcagggaggaggacttaccattgtcattttgc 495
Query: 301 attttgcattttgctgtctatccattctaaagtgttatttcaatt-----gttattgttg 355
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 496 attttgcattttgctggctatccattctaaagtgttatttcaattttattgttattgttg 555
Query: 356 aaaacacttctgcatactttcatattttagtctgtgacacattgcattcattcatttatt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aaaacacttctgcatactttcatattttagtctgtgacacattgcattcattcatttatt 615
Query: 416 cattcacttactcactttggtttttccgaaagacttactgtactaaatactatattaaac 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cattcacttactcactttggtttttccgaaagacttactgtactaaatactatattaaac 675
Query: 476 agtatcattgtccttaaaaatttcatgactttctctgccagatatattcaaatattttaa 535
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 676 agtatcattgtccttaaaaatttcatgactttctctgcaagatatattcaaatattttaa 735
Query: 536 atttggataatgatgcagtttttcataatcactacac 572
|||||||||||||||||||||||||||||||||||||
Sbjct: 736 atttggataatgatgcagtttttcataatcactacac 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
