BAC Information

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BAC

Clone NameMSMg01-231C15
Chromosome2 (Build37)
Map Location 78,553,438 - 78,553,753
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp533, BC003993, LOC667920, OTTMUSG00000016703, LOC383717, LOC100040476
Downstream geneLOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231C15.T7 (MSMg01no231_c15.b1)MSMg01-231C15.TJ (MSMg01no231_c15.g1)
ACCAG398069AG398070
length744742
length of high quality
(start - end)		319 (46 - 364)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no231_c15.b1 PHD_FILE: MSMg01no231_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:23 2005CHROMAT_FILE: MSMg01no231_c15.g1 PHD_FILE: MSMg01no231_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACAAAGGCAAGGCGAGTGAAAATGAGAAGCAGAGGGTTACATAA
ACACAAAAGGTTAAGACCTGCAAATCTGTGACACAGTTGGATCGTTCTCA
TTGCGGAGACATTACCATAGACGAAGACAGTCTGTAAATAGCTGAAATAG
TTCAACGGTTTCATGAAAATGAAGGTAAACAATTTGAGTTCGAAAGTATT
GTTAATTTATTTAGGAGAACTATTTAATCTTCAGCAGTGAAATATTAAAT
CAAACAGTTTTCTGCTCTGTTACTTATTTCTAGGGAGCAATAAAAGTTTT
ATTCACATGCTCTGATTGTTCTTGCCCCCCTCACCGAAAGACATGCAATC
AAATTTATCTCACAGAGAACAACGCCAAACACACAGAAATTCAAGAAAGC
CAATATGGGGCAATTGACAATAATTCATAAAGTTCACCAGGAAGAGGCCT
ACTAGACTCATGAATATAGGAAAAAATGACCTAGAAAATACTGCAGGTTG
AAGACCAGAGTTAGGATGTGAACATCTAACCGCAAAGAGTAAGACTAGAC
AGAAGGTCCGCAGCTGTGAGTGCCGAGTGACTGGTGTGCATGGGAATGCC
AAGGTGTTTGTGCACACAACTGTCTACTCTCAAAGCAGCAGTCAGGTTTG
CAACAACAAGCCATAAATCTTCATTGTTTCACTCTTCATAATCN

ACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAATTAGCTATATACTCGAGTTA
AAAAAATTAATTGTCATTTGGTTCTGCCTCTTCTAATGAGGAATAAATTT
TGTCTCACATGCTGATGAGTGCCTCACAACTCTGCCTGATTGCTTTCCAA
TACAGTCTCTACCTCACAAAGAATCCCATCCTACTTTCATTCATTGTGAG
CTGTTAATAGACTGTGTTTCTTATATTGGGGGGAAAAGCATGCCTTTTCA
CAATTTACACTATTGAATGTAAAACATTTCATTTACTGTTTCTCTAAGTG
ACTTCTTAACCTATTGTTTTTGTTCTCCCCCCCCCTGCAGAGGCCATCCA
CCATCGTCTGAGCATGTATACCACGCGTTTGCATATGTGTATGTGTGTGT
GTGATATTCACCTGTGTGTCCTCTGGTGTGTAGTTTTATGCTCTACTCAC
CTTTAGCTCTGGGAGGTGATTGTGTTACCAGCTCTCACCCAACTTCCCTA
TTGCTCTATCTGCCTTTGCTCTGGGAATTGGCCACTGCTATCAGTCCTCT
CCCAGCTTCCCTTGAATCTTCGGCTGAAAACACACACACACACACACACA
CATACTTACACTCATACACACTCATACACACATAGTTGTTCAATTTCAAC
TAGTCTTCATGGCACAATTGTTGGGTGCTGCTATTCTTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_c15.b1 MSMg01no231_c15.b1 CHROMAT_FILE:
MSMg01no231_c15.b1 PHD_FILE: MSMg01no231_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:23 2005
         (319 letters)



>mm_chr2_78553235_78553953
          Length = 719

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctacaaaggcaaggcgagtgaaaatgagaagcagagggttacataaacacaaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctacaaaggcaaggcgagtgaaaatgagaagcagagggttacataaacacaaaa 263

                                                                       
Query: 64  ggttaagacctgcaaatctgtgacacagttggatcgttctcattgcggagacattaccat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggttaagacctgcaaatctgtgacacagttggatcgttctcattgcggagacattaccat 323

                                                                       
Query: 124 agacgaagacagtctgtaaatagctgaaatagttcaacggtttcatgaaaatgaaggtaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agacgaagacagtctgtaaatagctgaaatagttcaacggtttcatgaaaatgaaggtaa 383

                                                                       
Query: 184 acaatttgagttcgaaagtattgttaatttatttaggagaactatttaatcttcagcagt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acaatttgagttcgaaagtattgttaatttatttaggagaactatttaatcttcagcagt 443

                                                                       
Query: 244 gaaatattaaatcaaacagttttctgctctgttacttatttctagggagcaataaaagtt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaaatattaaatcaaacagttttctgctctgttacttatttctagggagcaataaaagtt 503

                           
Query: 304 ttattcacatgctctg 319
           ||||||||||||||||
Sbjct: 504 ttattcacatgctctg 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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