BAC Information

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BAC

Clone NameMSMg01-231E12
Chromosome2 (Build37)
Map Location 180,792,661 - 180,792,946
singlet/doubletsinglet
Overlap genenone
Upstream geneSs18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4
Downstream geneKcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231E12.T7 (MSMg01no231_e12.b1)MSMg01-231E12.TJ (MSMg01no231_e12.g1)
ACCAG398149AG398150
length753747
length of high quality
(start - end)
360 (384 - 743)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no231_e12.b1 PHD_FILE: MSMg01no231_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:32 2005CHROMAT_FILE: MSMg01no231_e12.g1 PHD_FILE: MSMg01no231_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAGGTCTGTCTCCAGCACCATGTCTGCCTGCATGCTGCCACGTT
TCCTAACTATGAGGATAATGGATTCCACCTCTGAAACTGTAAGCCAGCCC
CAATTAAATGTAAGCCCTACTTTCTTTCGTAAGAGTTGCCATAGTCGCCG
GGCGGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAG
GCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGA
CAGCCAGAGCTATACAGAGAAACCCTGTCTCAAAACAAAAAAACAAAACA
AAACAAAACAAAAAATTTCTAAAAACACACCAAAAACAAGAGTTGCCATA
GTCATGGTATCTTATTATAAAACAAGTCCCCATAGTCATTAACAGTCTTA
AACTTGTTTAAAAGTTCAAAGTCTCTTTGAGGCTCATGCAATCCCTTAGC
TGGAGTCCCCTATAAATTCAAAATAAAAAAACAGATTACATACTTCCAAC
ATATAATGGGACAGTGTATATATTACTATTCCAAGGGGGAGAGAAATGAG
CATAATTGAGCAAACACGGACCAAAGCAAGATGGAAAAACAGCCGGGCAA
ACTCCAAACTGCATTTCCATGTCTGACGTCAAAGTGCTCTTTCAATCGAC
AACTCTGTTTAGCTTTTTTTTTTTTTTTTTTTGACTGAAATGAATTCTCT
GGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGACAAGTGGAGCTCTCTTAGC
AGAACAGCTCAGACAATCCCTTTTCGGACACCGAGCAGCCCAGGTTGGGC
TGGAGCACTCGATCTTCTCCCTCACCCTCGTGGATACAGAGGTTATGGGT
ATTTCATTCCGTCCACCCAAGCCTGTCCATGGAGCTATCGGGCCAGGAAC
TCTCACTGCCTCCCCACTGGCCTGAGCCTGGGGAGGCTGGGGACAGGTAG
GTGGAGAGTCTACCTACTCTGGGCTGCTGTACCAACTTTCCCAGTGCTGC
TAACCTCTCTGCTTAGTGGTTTTCNNCCCTGCCGCGTGTTCCCATCTTTA
TAGCAAGGCAACCAGGCTCCCCAGTATCAACTATGACGATATCTAGGGCA
TCCTGAGTTAGCACCGGGTGAGTGAATGTTGACAAAGGGTCAGCTGTCAG
ACTCAGGCTATTACAGACCCAGCTGAGGTCTAGCCCTGTGGCTTAAATCA
TGTCACACATCCCGCAAGCAGCAACAGGAAGAGGCTCCTTTGTGGGCATC
TGGCTGTCCCTTCCTCCAGGGCATGTGAATAACATGTATCAGTTCACATA
CACCAGACTCCACACTTCAATTTCTGGTAGAAAAACCATTATTTCTGATG
CAAATTTCTCAGCTCAAATAAATTACTGGAGCTTACCCTCTAGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_e12.g1 MSMg01no231_e12.g1 CHROMAT_FILE:
MSMg01no231_e12.g1 PHD_FILE: MSMg01no231_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:32 2005
         (286 letters)



>mm_chr2_180792461_180793146
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgacaagtggagctctcttagcagaacagctcagacaatcccttttcggacaccgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgacaagtggagctctcttagcagaacagctcagacaatcccttttcggacaccgagc 260

                                                                       
Query: 61  agcccaggttgggctggagcactcgatcttctccctcaccctcgtggatacagaggttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcccaggttgggctggagcactcgatcttctccctcaccctcgtggatacagaggttat 320

                                                                       
Query: 121 gggtatttcattccgtccacccaagcctgtccatggagctatcgggccaggaactctcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtatttcattccgtccacccaagcctgtccatggagctatcgggccaggaactctcac 380

                                                                       
Query: 181 tgcctccccactggcctgagcctggggaggctggggacaggtaggtggagagtctaccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcctccccactggcctgagcctggggaggctggggacaggtaggtggagagtctaccta 440

                                                         
Query: 241 ctctgggctgctgtaccaactttcccagtgctgctaacctctctgc 286
           |||| ||| || ||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctaggcagcagtaccaactttcccagtgctgctaacctctctgc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)