BAC Information

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BAC

Clone NameMSMg01-231H03
Chromosome2 (Build37)
Map Location 122,451,480 - 122,562,052
singlet/doubletdoublet
Overlap geneSpata5l1, AA467197, Slc30a4
Upstream geneFrmd5, Casc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm
Downstream genePldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231H03.T7 (MSMg01no231_h03.b1)MSMg01-231H03.TJ (MSMg01no231_h03.g1)
ACCAG398258AG398259
length735737
length of high quality
(start - end)
183 (437 - 619)246 (76 - 321)
definitionCHROMAT_FILE: MSMg01no231_h03.b1 PHD_FILE: MSMg01no231_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:44 2005CHROMAT_FILE: MSMg01no231_h03.g1 PHD_FILE: MSMg01no231_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,561,872 - 122,562,052)(122,451,480 - 122,451,725)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGTTAGGAATTTTATTATTTTTAACATTTTAACTTACTGTAACAA
AATCACCTAAATAAACATGGACCTTGTACCACATTCATCTTGCTTTTCTC
TCTGATCTTTTCCTTCTTTTTCTCTTACAGCTTGCAATTCAATGTGCCAC
TTGTTTGTTAAGAACCCTCTGTATATGACACAGAGCTCAAAGCAACTTCT
AAAACTTGATTGCAAAGAACACAACAGATTATTGTGTCATGTTATGTCTT
TTGAAGGGTCTTTAGTTTTCCCATTTTCTTTTACGTATCAAAGTTAAACA
CTCCAAATATTNNTTANGTACCCACTCCCCCCCACTGAACTAGACACCTT
AGTTATGCTAAAAATAGAGTTCTAAAAACAAAAAACAAAAACATTGCTAG
GCACCAAATGTTATAGTTTGTGTTAGAGTTTGTTCTTGAGGTTACATATT
ATGCATTGAAAAATGTATAACATTGTATTGTCCAGACAATGATCTACAAT
AGCCAAAGTTTGAGTTTTGAGTGAATGTTTATTAAATATACAGGAAGCCA
AAGTAAAAGAATAAACAGCAGAAGGGTGGGTGGCGTGTGTGGATGATGGT
GATAGAAACACATATGGCACAAAAATCCTCATATTATCAGCTCAACACTC
TCAGCAGAGGTTGACTGTGGATGCCCCATTATGGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGCCTAGAGAGGTTAAATGAATTCT
TAGGAACAACTCCTTCGAGAATGGCATCAAGTGCTAGCTGTGGTTCAGGT
TGAGCCCTGAGGAGAAGTGGGGTGGGGGGATGAGTGACTTCTCCCCCGAG
AGAGCACATTTTCCCACAAGATTCCAAGCCGATTGTTCTGAAACCCGTCA
GGCACTATTTCGCGTTTCTAACATATACTGTGTTTATTTGAATTCCAGAG
ATGTGAAGATCTGGGAGTAACTGCTTGGATTGAAATGGGCCAAGAAAATC
TTGAGAAAATGCCTATTTTTTCCCGCGCCCCCCACTCCTGCACAGTTCTG
GGTGTGGAAGGGAAACTGTGACCCCCATTACAATGGACAAACGGGGGCAT
TCAGCAGTGAGGATCATAAGCACACTGTGATTGCGCTGTAGAGTCTCATA
TCTGCTCAGCTTCAGATGCGTCAGAATCTGGGTCCTCGTCCCTCTGTCGC
AGTTTTGCTACTTTGTAAGCCAGCGTTTTATCTTCTTAAAGAACCACTCC
CATTTCTTGGCCCAATGCTCCCGAGGCCGCTTTTGGTCTCTTTCCTCTCA
AGGCGACACTATCTTAATAACTCTTGCTGGCCACTTCAACTTACTCGCTC
TTCCAAGAAGATTTTCTCCCCTCCCTGATTGGAACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_h03.b1 MSMg01no231_h03.b1 CHROMAT_FILE:
MSMg01no231_h03.b1 PHD_FILE: MSMg01no231_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:44 2005
         (183 letters)



>mm_chr2_122561670_122562252
          Length = 583

 Score =  350 bits (181), Expect = e-101
 Identities = 181/181 (100%)
 Strand = Plus / Minus

                                                                       
Query: 3   aaacattgctaggcaccaaatgttatagtttgtgttagagtttgttcttgaggttacata 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaacattgctaggcaccaaatgttatagtttgtgttagagtttgttcttgaggttacata 324

                                                                       
Query: 63  ttatgcattgaaaaatgtataacattgtattgtccagacaatgatctacaatagccaaag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttatgcattgaaaaatgtataacattgtattgtccagacaatgatctacaatagccaaag 264

                                                                       
Query: 123 tttgagttttgagtgaatgtttattaaatatacaggaagccaaagtaaaagaataaacag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttgagttttgagtgaatgtttattaaatatacaggaagccaaagtaaaagaataaacag 204

            
Query: 183 c 183
           |
Sbjct: 203 c 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no231_h03.g1 MSMg01no231_h03.g1 CHROMAT_FILE:
MSMg01no231_h03.g1 PHD_FILE: MSMg01no231_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:44 2005
         (246 letters)



>mm_chr2_122451280_122451925
          Length = 646

 Score =  422 bits (218), Expect = e-122
 Identities = 239/246 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctagagaggttaaatgaattcttaggaacaactccttcgagaatggcatcaagtgct 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tgcctagagaggttaaatgaattcttaggaacaactccttcaagaatggcatcaagtgct 260

                                                                       
Query: 61  agctgtggttcaggttgagccctgaggagaagtggggtggggggatgagtgacttctccc 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcggtggttcaggttgagccctgaggagaagtggggtggggggatgagtgacttctccc 320

                                                                       
Query: 121 ccgagagagcacattttcccacaagattccaagccgattgttctgaaacccgtcaggcac 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 ccgagagagcacattttcccacaagattccaagccaattgttctgaaacccgtcaggcac 380

                                                                       
Query: 181 tatttcgcgtttctaacatatactgtgtttatttgaattccagagatgtgaagatctggg 240
           ||||||| |||||||| |||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 381 tatttcgtgtttctaaaatatactgtgtttattcgaattccaaagatgtgaagatctggg 440

                 
Query: 241 agtaac 246
           ||||||
Sbjct: 441 agtaac 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)