BAC Information

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BAC

Clone NameMSMg01-231L10
Chromosome2 (Build37)
Map Location 66,642,618 - 66,642,930
singlet/doubletsinglet
Overlap genenone
Upstream geneA330102K23Rik, Galnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a, Scn7a
Downstream geneLOC383707, LOC100039540, Gm1322, Cmya3, LOC621171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231L10.T7 (MSMg01no231_l10.b1)MSMg01-231L10.TJ (MSMg01no231_l10.g1)
ACCAG398446AG398447
length716774
length of high quality
(start - end)
317 (45 - 361)52 (76 - 127)
definitionCHROMAT_FILE: MSMg01no231_l10.b1 PHD_FILE: MSMg01no231_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:04 2005CHROMAT_FILE: MSMg01no231_l10.g1 PHD_FILE: MSMg01no231_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAGAAAGACAAACACTAGTGCCTGGCTACACAGCTATGGATTCCT
CACTTCTGCACCTCCTATATCTCCAGCAAACAGTTATTTCTTGTGTTTTG
CTCGTGATTTTAATCCCTCCAAACTGCTCCTGTGGGACTGCAATCACCAA
TAAACCAGGCGCATTAAGCTTTAACTTCAAGTTTATTTTCTATTATTCTT
GCCCAAGCCAGGGTAGCTAGATGGGTAGTATTTAATATTTAATATAATTT
CTGTCCTCATGTAACTTTCAGTGATGTAGGAGTCTATCCATTTTCTATTA
GAGCAGTCATGGATATCTGACCACCCCCACATGCCCCAAGATACTTGAGT
TTAAAAATTCAGACATTAACCCAGTAGGGTTTGCCCAGAACTGTTCCCTC
CAGATTGCCCAAGTGTTACAGAAGTACTGGGAATTACAGTGCATGGTTTC
CTTCATTCTAGGAATAGGATTTCTTCTGAAGATAATGNAAAGAAAAACTG
ATAAGATGTAAATGAAGTTGAAAAAAATCAGATAGCAAACTTTATGAATG
ACTCATGATTCAGTATAGTGAAGGGTTTGGCCAAGAAATGGGATACCCCA
GACTGCTTTAATAAGGAGACACTAACTCTGACCATTGCAAATGTACCTGC
AGTAATCACTGTATCN
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAGGGCCAGGAAGCAGGAATGGGTG
GGTTGGTGAGTAGGAGGAGGGGAGGATNTCNTGCNTTTGTATCTGACGCA
GCATTGAATGTCTGAGTACCCGTTGGTCATCCCTGCTCATGTGCCTGTGG
AAAGTCTAACAGATCACCTGGTTTAAAAGCAAGGTTGGAGGTCTAGTCAA
TCATGTTCTCTGTTCTAGTGCTCAATCAGATTCTGGATAAAGCTCTTTTG
CCGCTAAAACTCGAAAGCAGTTTGTTTTTTTGATTATGGGATGGATCCCC
GGACGGGAAATTTAAATGATTCCCAAAAACAATGCCCCTAGTTTTTTTTT
GGTAATTTTTTTCTTTGCCCCCCCCCTCAAAAAAAAAAAAAATTTTCTGG
GTGGGGGCGGGGATGATTTTGTTGTATTGTTACTTTTTTTATCTTTGTCT
TTTTGACCGTTTTTTCTATTTCCTCGGTAATACTGAAAATGCGATGCTAT
ATATTCCTATTTTTATTTCATTATATTATTAGTATACCTCCAATATTTTC
AATTTTCCATATTTGTATTTTTCTTATCCTTTTACGCGCCCCCGTGTTTT
CCTTTTCTTGTTATACATACTCTAAGGATCCTTTTATATTTTCTTCTCTT
ATTCTTTTTCTCCCCCCTAAATACATGCCCCTCTAAATTTATTCCTTTTA
CCCTCCATTTTTATGTTATATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_l10.b1 MSMg01no231_l10.b1 CHROMAT_FILE:
MSMg01no231_l10.b1 PHD_FILE: MSMg01no231_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:04 2005
         (317 letters)



>mm_chr2_66642414_66643130
          Length = 717

 Score =  559 bits (289), Expect = e-164
 Identities = 307/313 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagaaagacaaacactagtgcctggctacacagctatggattcctcacttctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagaaagacaaacactagtgcctggctacacagctatggattcctcacttctg 264

                                                                       
Query: 65  cacctcctatatctccagcaaacagttatttcttgtgttttgctcgtgattttaatccct 124
           ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 cacctcctagatctccagcaaacagttatttcttgtgttttgctcgttattttaatccct 324

                                                                       
Query: 125 ccaaactgctcctgtgggactgcaatcaccaataaaccaggcgcattaagctttaacttc 184
           |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaaactgctcccgtgggattgcaatcaccaataaaccaggcgcattaagctttaacttc 384

                                                                       
Query: 185 aagtttattttctattattcttgcccaagccagggtagctagatgggtagtatttaatat 244
           || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 385 aaatttattttctattattcttgcccaagccagggtagctagatgggtggtatttaatat 444

                                                                       
Query: 245 ttaatataatttctgtcctcatgtaactttcagtgatgtaggagtctatccattttctat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaatataatttctgtcctcatgtaactttcagtgatgtaggagtctatccattttctat 504

                        
Query: 305 tagagcagtcatg 317
           |||||||||||||
Sbjct: 505 tagagcagtcatg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)