BAC Information

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BAC

Clone NameMSMg01-231L17
Chromosome2 (Build37)
Map Location 80,834,088 - 80,834,374
singlet/doubletsinglet
Overlap geneLOC100040655
Upstream genePde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624
Downstream geneLOC100040704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231L17.T7 (MSMg01no231_l17.b1)MSMg01-231L17.TJ (MSMg01no231_l17.g1)
ACCAG398459AG398460
length733737
length of high quality
(start - end)
654 (46 - 699)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no231_l17.b1 PHD_FILE: MSMg01no231_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:05 2005CHROMAT_FILE: MSMg01no231_l17.g1 PHD_FILE: MSMg01no231_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGCTAATGACACACATGCATTAGTCTGCCTTGCACCGTGTAGT
TGAACACCATTTGTTGGTTCTTCACAGAGAAAAATGCACCAAAAAACTTC
TGGTGATGGGCTATAGTATCTTGCTACTTCCTCAGAATCAGGCTGACAGA
CAGAATGGTGTCAACTGAGACAGACTCACTTACTGAGACAAGACATGTGC
TAAGATAAGACCCTTGGAGGATACATGGTATTTAGAGGGAGTATAAAAAC
AATTCAGTGGACAATGATGGAGACTGAGCTAGGCTTACTTACAGAGCTAG
CTGTATGATGCTTGTTGGTCTTGTCTCTTTGCTGATCTTCACTTCACTGA
GAGAGACACAGCCTAGAGCCTCTCCTGACATCCCTCCTGGTACCTCCTGA
TGACGAGTGCTGAGGTGTCTCTGCTAAGTAGTGCCACCATTGCTGATTTT
GTGTTTGCTATCCAGACTCTACCAAACTGGATTGCTGGTGTATTCCTGAA
GTTCTCTCANATAGGTCTAGCTGCCGCTGCTGACCTCTGAACTGAACTGC
TGATTTCCTGACAACACAGGTGATAGTTGCTCCAAAAACTCATTTCTAAA
CAGGTCCACTTCACCCCTATATCCTTTCTTTTCTACAAACCCTGGGGGGG
TGGTGGACTAGAAGGGAGGTTAAAGCATTTAAG
TCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACATCTTAGAGCCCAACTCA
GTTATCTCCTGGCACTTAACAGCTGCATGAGTGACTCCCAGCAACAAAAC
ACAATGAACCACTCCTTTACGTGTTGCTGCAAGAAATAATAATCATGGCT
GTTGTTAGGGCAACTAACAAAATGTTGTGAGTTTTGTTGGATTACAACTG
ACAAGCAGCTCTGTAGGCTCTCGAGGGGGCAGAGAATTTTGCTTTTACTC
ACGAATTTGGACTCTGCTTGAAGTTATTTGATGTTTTTTCACAAAGTTGA
AGAGTTTTATTCTTTTTGGTTACACNTNTCANTGCCACACTGGATTGTAG
CCAGGCAGTATGGATGGGTACAACATAAAATACTTAAGTGTTGGCTTATA
GGATCACCTGACTCTGTGCCCACAATATGGGCAGAATTAGGGGGAAGGTA
ATAATTTGTGAAAAGAGAAAGAGTGAGCAGAAATACCACTCTTCTCTTAG
GGCAGGGATAGGTAAGTGACTGCTGTATCAATACATTAAAACTACAGGGA
CTCTGGTAAAGTGAAATATAGAGATAGCAACACCTTTTAAACCTTATTTA
TCTCATTCACTCTGAGCCAGTGACAACTGTGTAGAAGGCAGGTGTTTACT
TGATGGGTTTGGATATAGATAGTGAAGTCCCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_l17.g1 MSMg01no231_l17.g1 CHROMAT_FILE:
MSMg01no231_l17.g1 PHD_FILE: MSMg01no231_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:05 2005
         (291 letters)



>mm_chr2_80833888_80834578
          Length = 691

 Score =  516 bits (267), Expect = e-151
 Identities = 282/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcacatcttagagcccaactcagttatctcctggcacttaacagctgcatgagtgact 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcacatcttagagcccaaatcagttatctcctggcacttaacagctgcatgagtgact 260

                                                                       
Query: 61  cccagcaacaaaacacaatgaaccactcctttacgtgttgctgcaagaaataataatcat 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 cccagcaacaaaacacaatgaaccactcctttacatgttgctgcaagaaataataatcat 320

                                                                       
Query: 121 ggctgttgttagggcaactaacaaaatgttgtgagttttgttggattacaactgacaagc 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgttgttagggcaactaacaaaatgttgtgagttttgttggattacaactgacaagc 380

                                                                       
Query: 181 agctctgtaggctctcgagggggcagagaattttgcttttactcacgaatttggactctg 240
           ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 381 agctctgtaggctctcgagggggcagagaattttgcttttactcatgagtttggactctg 440

                                                          
Query: 241 cttgaagttatttgatgttttttcacaaagttgaagagttttattct 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgaagttatttgatgttttttcacaaagttgaagagttttattct 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)