Query= MSMg01no232_d04.b1 MSMg01no232_d04.b1 CHROMAT_FILE:
MSMg01no232_d04.b1 PHD_FILE: MSMg01no232_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:38 2005
(323 letters)
>mm_chr2_140874955_140875677
Length = 723
Score = 584 bits (302), Expect = e-171
Identities = 314/318 (98%), Gaps = 2/318 (0%)
Strand = Plus / Minus
Query: 5 gaattctcagggagttttaattatgcgttagcaagagactccaataaatcaaagatagtt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattctcagggagttttaattatgcgttagcaagagactccaataaatcaaagatagtt 462
Query: 65 gtctattctgaaaagaaaatctaggggaaaaaatctgactccagagaaatctaaacaact 124
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 461 gtctattctgaaaagaaaatctagggg-aaaaatctgactccagagaaatctaaacaact 403
Query: 125 ttctcaaccctt-agagaacaaacaagtctcagcttgaaactacagaaaacttggtgctc 183
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ttctcaacccttaagagaacaaacaagtctcagcttgaaactacagaaaacttggtgctc 343
Query: 184 agcttacttataatttatggaaaaatataaaactgaatgcatgttccctcttcatttcaa 243
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 agcttacttataatttatgaaaaaatataaaactgaatgcatgttccctcttcatttcaa 283
Query: 244 ctctaatatgcaaggtaggaaatatctttggaagatggagatagagaaagtcttcagagg 303
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ctctaatattcaaggtaggaaatatctttggaagatggagatagagaaagtcttcagagg 223
Query: 304 gcagatgctagtcagcag 321
||||||||||||||||||
Sbjct: 222 gcagatgctagtcagcag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no232_d04.g1 MSMg01no232_d04.g1 CHROMAT_FILE:
MSMg01no232_d04.g1 PHD_FILE: MSMg01no232_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:38 2005
(239 letters)
>mm_chr2_140839752_140840390
Length = 639
Score = 424 bits (219), Expect = e-123
Identities = 234/239 (97%)
Strand = Plus / Plus
Query: 1 gtggagaaagagattctacctcttgatgaagggattttcagtgtaacttacattgcagag 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 gtggagaaagagattctacctcttgatgaggggattttcagtgtaacttacattgcagag 260
Query: 61 agcaggagcataaggaaggaaatgctgcagtttttgtttctaagatctgtcaattaagat 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 agcaggagcataaggaaggaaatgctgcagtttttgtttctaagatccgtcaattaagat 320
Query: 121 gctttggatgcttatccaggtctctagaagctaagtacctcacacgctagatcttttcac 180
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 gctttggacgcttatccaggtctctagaagctaagtacctcacatgctagatcttttcac 380
Query: 181 ttccttaaacatccaagtaggacccagtagtagacctgttgtatagatgcagacagtct 239
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 ttccttaaacatccaagtaggacccagtagtagacctgttgtacagatgcagacagtct 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
