ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTACATATATATGTTAGCAAAAATATAAAATGGTGATTCTGGTATTGA
AAACAATACAACATATATACATAACAAAAATTAAAGAAAAAAAGAATCCG
TGAATTTGAAAGAAAGTCAGAGGTGGTACTTGGGAGGACATGGGTGGATG
GATAAAATCTCAAAAAGTAAAAAGTTATATAAAAATAATTTTAAAAAACA
GAAGTTACTTAAAAACAAAAAACACAATTATCACATGGTTCAGCAATTCC
ACTTCTGGGTATAGTCCCAAAAGAAATTAAAATAGTAACTCAGAGATACA
CTGCTGTATTTCCCTGCTCACCACAAGATTCACAATAGCTCAATGTTGAA
GAAAACCAACCATCCACTAACTAGTGAATAAATAAATAAAATATGGTATA
TACATGTAACATTATTCAGCCTTAAAGAATAAGTGAAATCTAACAGATCA
TACAACAATATGAGTAAATTTTGAGAGCATTATTTGCTAAGTCACAAAAG
AACAAATATTGTGATTCCACTAATAGGAATATCTATATGGAGTAAAATCC
ATAGATACAGAAAGAGCTTATTACAAAACTATAATAAAACACTGTGGTAC
AGAGATAATGACATATGGGATGCCCAGAACAATGTCCTGACATATATAGC
CATTCTGTTCCATTTGTCGATTGACAGGTCGGTCCTAGGAGA

TTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGGATGAATGGAGCCAAAGAGAAATT
GTGAGTGTAGCAATGGCTCAAGCCCTGGAGGAGGTGCGGAAACAGAGAGA
AGAGTTCCAGCAACAGGTAGGTCCCTGGCTGGCTACCAAGGTGTAAGCCA
AAACTGTGTTCCCCTGCAGTCTCAGTGGCACTGCACCTCCTATGTGGGGC
CATCAGAGAGACCCCATATACCCAGGGTAAGCATGTCAAGGGTCTCTAGG
AACACAATCAATTGGAAAATGCCCTATGACCTGTAGGTTACTTGGAGAAA
CTATTATTTATAAACCTCACCCCACATGATGCCCTTCCTAAATTTTCATG
GTTACTTAGTTGCCCACATTGATTGGAGAAAAAGTCATTAGGGAACTAAC
AGTCTGATTCTGTCAAGTGGTACATCACCACCTGCTATTCCTAAGGGGTA
AGCCAGAAGTATAAGAAAAACTATATGTGGGGACAAATAGAGCACCTGGC
TCTTGCTCTGCTGACTAGAGGTCTCCAGTGAGTTCTTGACCAATCTGAGG
CCAGTCGCTTCTGGAAAAAACTTAGAGTGATCATACCTTCTGATACGAGC
ATGAGGTACACAACAGGCTGGTGAATTGTGGGTGCTCAGGAAAGGATGTG
TTGTGAGGCTAACCAGAATATCCACACTCTGGGTAGCCN

Query= MSMg01no232_m16.b1 MSMg01no232_m16.b1 CHROMAT_FILE:
MSMg01no232_m16.b1 PHD_FILE: MSMg01no232_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:21 2005
         (366 letters)



>mm_chr2_38723884_38724649
          Length = 766

 Score =  692 bits (358), Expect = 0.0
 Identities = 364/366 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattcacaatagctcaatgttgaagaaaaccaaccatccactaactagtgaataaataaa 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 gattcacaatagctcaatgttgaagaaaaccaagcatccactaactagtgaataaataaa 260

                                                                       
Query: 61  taaaatatggtatatacatgtaacattattcagccttaaagaataagtgaaatctaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 taaaatatggtatatacatgtaacattattcagccttaaagaataagtgaattctaacag 320

                                                                       
Query: 121 atcatacaacaatatgagtaaattttgagagcattatttgctaagtcacaaaagaacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcatacaacaatatgagtaaattttgagagcattatttgctaagtcacaaaagaacaaa 380

                                                                       
Query: 181 tattgtgattccactaataggaatatctatatggagtaaaatccatagatacagaaagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattgtgattccactaataggaatatctatatggagtaaaatccatagatacagaaagag 440

                                                                       
Query: 241 cttattacaaaactataataaaacactgtggtacagagataatgacatatgggatgccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttattacaaaactataataaaacactgtggtacagagataatgacatatgggatgccca 500

                                                                       
Query: 301 gaacaatgtcctgacatatatagccattctgttccatttgtcgattgacaggtcggtcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaacaatgtcctgacatatatagccattctgttccatttgtcgattgacaggtcggtcct 560

                 
Query: 361 aggaga 366
           ||||||
Sbjct: 561 aggaga 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no232_m16.g1 MSMg01no232_m16.g1 CHROMAT_FILE:
MSMg01no232_m16.g1 PHD_FILE: MSMg01no232_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:22 2005
         (361 letters)



>mm_chr2_38878958_38879718
          Length = 761

 Score =  636 bits (329), Expect = 0.0
 Identities = 353/361 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatgcccttcctaaattttcatggttacttagttgcccacattgattggagaaaaagtc 60
           ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 561 tgatgcccttcctaaattttcatggttacttagttgtaaacattgattggagaaaaagtc 502

                                                                       
Query: 61  attagggaactaacagtctgattctgtcaagtggtacatcaccacctgctattcctaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 501 attagggaactaacagtctgattctgtcaagtggtacatcaccacctgctattcccaaag 442

                                                                       
Query: 121 ggtaagccagaagtataagaaaaactatatgtggggacaaatagagcacctggctcttgc 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtaagccagaagtataggaaaaactatatgtggggacaaatagagcacctggctcttgc 382

                                                                       
Query: 181 tctgctgactagaggtctccagtgagttcttgaccaatctgaggccagtcgcttctggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgctgactagaggtctccagtgagttcttgaccaatctgaggccagtcgcttctggaa 322

                                                                       
Query: 241 aaaacttagagtgatcataccttctgatacgagcatgaggtacacaacaggctggtgaat 300
           |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 321 aaaacttagagtgatcataccttctgataccagcatgaggtacgcaacaggctggtgaat 262

                                                                       
Query: 301 tgtgggtgctcaggaaaggatgtgttgtgaggctaaccagaatatccacactctgggtag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgggtgctcaggaaaggatgtgttgtgaggctaaccagaatatccacactctgggtag 202

            
Query: 361 c 361
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)