Query= MSMg01no233_a11.b1 MSMg01no233_a11.b1 CHROMAT_FILE:
MSMg01no233_a11.b1 PHD_FILE: MSMg01no233_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:40 2005
(689 letters)
>mm_chr2_95878388_95879478
Length = 1091
Score = 1292 bits (668), Expect = 0.0
Identities = 682/688 (99%), Gaps = 4/688 (0%)
Strand = Plus / Minus
Query: 5 gaattcagttaactttgctaaccagttgtctgggcattgcttgtcattggcttgaaatat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 gaattcagttaactttgctaaccagttgtctgggcattgcttgtcattggcttgaaatat 832
Query: 65 agaatctcaaagtatctataaaaaaaatgacatttacctcagatcccatgtgatttacat 124
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 agaatctcaaagtatctat-aaaaaaatgacatttacctcagatcccatgtgatttacat 773
Query: 125 tcataggtacataggtcacactgttatggggagtgtaaagtgtaaggaaattcacagaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tcataggtacataggtcacactgttatggggagtgtaaagtgtaaggaaattcacagaac 713
Query: 185 tctaaaactgacattaaccatagacattattagacataattgccacatgtgcagggcttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tctaaaactgacattaaccatagacattattagacataattgccacatgtgcagggcttc 653
Query: 245 atttgctgagacctcagctaacaaagaaaaaaacagcgtcacctaaatccctgacttcaa 304
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 atttgctgggacctcagctaacaaagaaaaaaacagcgtcacctaaatccctgacttcaa 593
Query: 305 ctcccttttgtttctgttgtctttttag---catttttgctgctttgaatctctttgaag 361
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 592 ctcccttttgtttctgttgtctttttagcatcatttttgctgctttgaatctctttgaag 533
Query: 362 agagcaagaggaaacctgactgcctgcttagaattcagattagaaaatattcaaatataa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 agagcaagaggaaacctgactgcctgcttagaattcagattagaaaatattcaaatataa 473
Query: 422 atcaccccagactattttaatttaatagaaacaggttcatttactcaattttaacttctg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 atcaccccagactattttaatttaatagaaacaggttcatttactcaattttaacttctg 413
Query: 482 cctcaggtacatgaaaatcttgctcaaaacatcttcctgatccgtttttgatattagtcg 541
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 412 cctcaggtacatgaaaatcttgctcaaaacatcttcctgatccgttttttatattagtcg 353
Query: 542 atgaagagaatcagagtatggtttaaaaagcatggactgatcacttctttgaagaattca 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 atgaagagaatcagagtatggtttaaaaagcatggactgatcacttctttgaagaattca 293
Query: 602 taattctggattcttgttcaccatcatgcatcttctttcattatgttcagactcttttcc 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 taattctggattcttgttcaccatcatgcatcttctttcattatgttcagactcttttcc 233
Query: 662 acatcagacaagatcttgttctgtctgt 689
||||||||||||||||||||||||||||
Sbjct: 232 acatcagacaagatcttgttctgtctgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1091
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1081
Effective search space: 733999
Effective search space used: 733999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_a11.g1 MSMg01no233_a11.g1 CHROMAT_FILE:
MSMg01no233_a11.g1 PHD_FILE: MSMg01no233_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:40 2005
(659 letters)
>mm_chr2_95759102_95760162
Length = 1061
Score = 1189 bits (615), Expect = 0.0
Identities = 649/661 (98%), Gaps = 2/661 (0%)
Strand = Plus / Plus
Query: 1 caataaccatgtgaataataataacaactaccgatagtttcagtgatgctgaaaatatga 60
||||||||||||||||||||||||||||||| ||| ||||| |||||| ||||||| |||
Sbjct: 201 caataaccatgtgaataataataacaactactgatcgtttcggtgatgatgaaaatgtga 260
Query: 61 tttatgatcacatgagagcagcacagtcttgagatagcaacatatgcttgtttttctgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatgatcacatgagagcagcacagtcttgagatagcaacatatgcttgtttttctgtt 320
Query: 121 attggacgccatcctcgccttttttcctgttcaaattgaaagtactccccttttgttcct 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attggacgccatccttgccttttttcctgttcaaattgaaagtactccccttttgttcct 380
Query: 181 cctaatcaagggaggctccattggtaaaaaagaaatatttgcactctggttataaaatcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctaatcaagggaggctccattggtaaaaaagaaatatttgcactctggttataaaatcc 440
Query: 241 atttggagagagaagattagggatattcataaaatatctcatgtctgagaaagaagtacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttggagagagaagattagggatattcataaaatatctcatgtctgagaaagaagtacc 500
Query: 301 ccagtgggg--aaaaaaaaggaatgcagaggaaagccagtgccttagtgtgttaggatga 358
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagtggggggaaaaaaaaggaatgcagaggaaagccagtgccttagtgtgttaggatga 560
Query: 359 ggttaagtaacaatgaggcataagcacaaaatggtctttttcagcacagggtgatgggga 418
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggttaagtaacaatgaggcataggcacaaaatggtctttttcagcacagggtgatgggga 620
Query: 419 aagacacagcctggatgctgtggttgtagcgtgccccccaagtgttcatgtgttgcaaac 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagacacagcctggatgctgtggttgtagcgtgccccccaagtgttcatgtgttgcaaac 680
Query: 479 ctaagtccagaattcttacattagaatttaagtgagaaatgtgtaagggccaatgagctt 538
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 ctaagtccagaattcttacattagaatttaagtgagaaatgtgtaagggccgatgagctt 740
Query: 539 gagatcaatggctttgaaaaagtagtttccgtccttgtgtttcctcaccctgtgaaatcc 598
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 741 gagatcaatggctttgaaatagtagtttccgtccttgtgtttcctcaccgtgtgaaatcc 800
Query: 599 tttgccttggtatgatgaaaagacaattcttggaactatagagaagtaaatatctattct 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttgccttggtatgatgaaaagacaattcttggaactatagagaagtaaatatctattct 860
Query: 659 t 659
|
Sbjct: 861 t 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1061
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1051
Effective search space: 682099
Effective search space used: 682099
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
