BAC Information

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BAC

Clone NameMSMg01-233B11
Chromosome2 (Build37)
Map Location 92,025,969 - 92,026,278
singlet/doubletsinglet
Overlap genenone
Upstream geneNr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1
Downstream genePhf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1, Syt13, LOC100042784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233B11.T7 (MSMg01no233_b11.b1)MSMg01-233B11.TJ (MSMg01no233_b11.g1)
ACCAG399398AG399399
length758774
length of high quality
(start - end)
325 (12 - 336)148 (74 - 221)
definitionCHROMAT_FILE: MSMg01no233_b11.b1 PHD_FILE: MSMg01no233_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:44 2005CHROMAT_FILE: MSMg01no233_b11.g1 PHD_FILE: MSMg01no233_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTATAGGGAGAGGATCCGCGGAATTCGGTGTCATCATATTCCGGTC
ATATGTTGAAATATTCTTTGTTTAGGTCTTGAAGTAGAGGATCTCCCTCT
GCACGTCCACATTGTGTTGTTTTTAAATGATGTCTCCGGGAGTATGGATT
TCTAGAATCACAAATGTGATTTTAAGGTCTCGGCATGTGTGGGCCTCAGC
ACTGGCCTTGACAGTGAACTTTATGGCTGTGTTTTTGGACTTCTAAGATT
TTATCCCATGGCTGGGATGCTCGTTATGCTTTTTCTTAATGGTATATAAT
CAGGAATGTAGAGTCTTGAGCTGAGGAAGTTAGATTTTTTTTTGTCATCC
CCCCCCCACTAATTGATAGCTGAGTGTTAGAATCAGATTCCTTCCCCCCT
GTTTGAAAGATTTTGGTTGTTGTTTTTCCTTCCTTTCTCTTTCTATATCT
TTTCCTTTACTTCTTCGCATCCATTTAGCTATCTCTTTCCTTTTTCTACA
CCCTCCTTCTTTTATTCAATTTTTATTTATCCACCTTTATATTTCCCTTT
TTCTTTTTTTTCCTCTATTTTTTATTTATCTTCTTTTCTTTTCCCTTTAT
TTTCTCTTCATTCCCTCCCACTATCTTTTTTTCTTCCTATCCTATATTTT
TCACCATTTTATTTCCTTCCATTTCTTTTTTTTTCCACCCACCCTCCCTT
ATTTTTCCTTTCTATTACTTTCCATCTAACTCACTTCTTATTTTTCCCCT
TCTCTCCT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTGCTAAAACCTTCTGGCTCTAGCCT
TTCTTTGTTTGGTACATGTCTCAGTTAGAGTTTTACTGCTGTGAACAGAC
ACTAAGACCAAGGCAACTCTTTTTTTTTTTTTTAAAGATTTATTTATTGG
TTATATGTAAGTACACTGTAGCTGTCTTCAACCTNNNTCCAGAAAAGGGA
GTCAGATATCATTACGGATGGTTGTGAGCCACCATATGGTTGCTGGGATT
TGAACTCCGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCATTGAGCC
ATCTCATTTTTTTTTAAGGCCCCCCCCCACATGAAAAAATTTTATTGGGG
CTGCCTTACAGGCCCCCAAGTCCAAAACCAATAATCTCAGGGGAACAACA
TGACCGCCTTCCAGGCAGGCCTGGTGGCAAAAAGAACCGAAAAGTTCCAA
ATCCTTCTTCGGAATACCCGCCCCACCCCCAGCTGTGGTAGATACCTTCT
TTCCCCCCCCCGCTGCTCTTTAAGGCCTTGGGCCTATAACCCCAACTTAG
ACTTTTGGATAGGTTTCTCTCTTCCTTTCCTCGGATTCTCCNCCCCCCCC
TCCCTTCATATTTATTTATCTCCTCCTTCCTATCTTCCGCTTCTTTTCCT
CTTCTTCCCTCCCTTCTCTTATTTAACTCACTATTTTCTCCCCCACCCAC
AAAAATTTTCTTTCCTTCTTACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_b11.b1 MSMg01no233_b11.b1 CHROMAT_FILE:
MSMg01no233_b11.b1 PHD_FILE: MSMg01no233_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:44 2005
         (325 letters)



>mm_chr2_92025756_92026480
          Length = 725

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 14  gaattcggtgtcatcatattccggtcatatgttgaaatattctttgtttaggtcttgaag 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaattcggtgtcatcatattccggtcatatgttgaaatattctttgtttaggtcttgaag 273

                                                                       
Query: 74  tagaggatctccctctgcacgtccacattgtgttgtttttaaatgatgtctccgggagta 133
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 274 tagaggatctccctctgcacgtccacattgtgttgtttttaaatgatgtttccgggagta 333

                                                                       
Query: 134 tggatttctagaatcacaaatgtgattttaaggtctcggcatgtgtgggcctcagcactg 193
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tggatttctagaatcacaaatgtgattttaaggtctcggcatgtgtgggcctcagcactg 393

                                                                       
Query: 194 gccttgacagtgaactttatggctgtgtttttggacttctaagattttatcccatggctg 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gccttgacagtgaactttatggctgtgtttttggacttctaagattttatcccatggctg 453

                                                                       
Query: 254 ggatgctcgttatgctttttcttaatggtatataatcaggaatgtagagtcttgagctga 313
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 454 ggatgctcgttatgctttttcttaatggtagataatcaggaatgtagagtcttgagctga 513

                     
Query: 314 ggaagttaga 323
           ||||||||||
Sbjct: 514 ggaagttaga 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)