TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATCTAATATACAACCATTTTCTTTACCACTGACATCTCAGCAAAA
GACCATCCCCATCGGCTTCTCCACTACCAAGCCCCACCAATCCCTCTTCC
CACCCCAACCCCTGCAGCCTCAAAATACTCCAAAAAAAAAAAAGTTTCCT
GACTCATTTCCCAGAGTCTTCTCTGCCTTTAACCTCCCCTAACACAATGT
TCTTCCCACTTTAAAAACACTCTACATTGGTTTGTTCTAGGCTAGTTTGG
GGAATCCTGTGAAGAGAATAACTACTATAAAACAAAAACTCACTCTCTAG
ACTCTCTTAAATGATTCTCTCCCCCCCCCCCACACAAGCTGTAAGCTCAC
CATGGCGGAAGCTGCTTTCCTGAAAAAAAACTAGTTCCATTTCTGATTGC
GATGTGCAGATCTTCCCTAGGCCATGCTTTTGCATAACATCTCCATGAGG
CCTGTCCTTACAGGTCACTACTATGGGGCCATGGCTGCCTCCACACTCAG
GTCCAGACCATTTCTCACAAGCAGAGAGTGACTCTACTTCAGGAAAGTTT
ACATGCCCATTAGTCTACTGTTCCAAATCCATGTCTAAACACTTACCCAT
CAAACACTGAGCCCCTCACTCTATCTACAGAGAAATACATGTCTTGGTTT
TGACCATACATCCTTACAT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGTAGAAGCTAACGGACAACCTT
GGATGTCAGCCTCAGGAACTCTGTCTACTTCCTTTGAGGCATGGTTTCAC
ATTGACTTGAACCTCACCAATGAGGCTAGACAGGCTGGCCAGTGGGCTCC
TGGGATACTCCTGTTTCTGCCTCCCCAGTGACTGGACTAAAGGGGCACCA
CTATTCCCTACATTTTACATGGGAGCTGGAGATTGAAGGCAGGTCCTCAG
GCTTGCAATGAAGCAGATTAATGATCGAATCACCTTTAAGCCACGCCAGG
ACAAATAATTTTTAATTTCCCTTACTCCAAATATTCAAAATAGGCAAAGT
AAAAGAGGCAAAGTACAGATTTGGAGAAGCTGAGAGAAGAAGGTGAGCAA
ATAATGGCTTAATAGCCTTTCCTTGTGGAGCGATGAAAACATTTTGAAAA
TAGGTAAAAATGGATGGATATCACACAACATTGTGAAAGTAACAATGCTC
TGGTCACTGAATTGTTTACATTAAGATGATTAGTGTTGTACTGCATAATT
CTCACCTCAATGAAATGAAAAGGAAAGAAAAAGTGAACAGTGAAACAGAA
CAAAAGAAAACACCCCCAAGCAAACAGAAGTCTTTAAGTCAAAGTCCCTG
AAAAGATCACAGGCTGC

Query= MSMg01no233_f21.b1 MSMg01no233_f21.b1 CHROMAT_FILE:
MSMg01no233_f21.b1 PHD_FILE: MSMg01no233_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:03 2005
         (285 letters)



>mm_chr2_139790335_139791019
          Length = 685

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccatttctgattgcgatgtgcagatcttccctaggccatgcttttgcataacatctcc 60
           |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ttccatttctgaatgcgatgtgcagatcttccctaggccatgcttttgcacaacatctcc 260

                                                                       
Query: 61  atgaggcctgtccttacaggtcactactatggggccatggctgcctccacactcaggtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaggcctgtccttacaggtcactactatggggccatggctgcctccacactcaggtcc 320

                                                                       
Query: 121 agaccatttctcacaagcagagagtgactctacttcaggaaagtttacatgcccattagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 agaccatttctcacaagcagagagtgactctacttcaggaaagtttatatgcccattagt 380

                                                                       
Query: 181 ctactgttccaaatccatgtctaaacacttacccatcaaacactgagcccctcactctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctactgttccaaatccatgtctaaacacttacccatcaaacactgagcccctcactctat 440

                                                        
Query: 241 ctacagagaaatacatgtcttggttttgaccatacatccttacat 285
           ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctacaaagaaatacatgtcttggttttgaccatacatccttacat 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no233_f21.g1 MSMg01no233_f21.g1 CHROMAT_FILE:
MSMg01no233_f21.g1 PHD_FILE: MSMg01no233_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:03 2005
         (337 letters)



>mm_chr2_139928842_139929578
          Length = 737

 Score =  553 bits (286), Expect = e-162
 Identities = 301/306 (98%)
 Strand = Plus / Minus

                                                                       
Query: 32  agtacagatttggagaagctgagagaagaaggtgagcaaataatggcttaatagcctttc 91
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 737 agtacagatttggagaagctgagagaagaaggtgagcaagtaatggcttaatagcctttc 678

                                                                       
Query: 92  cttgtggagcgatgaaaacattttgaaaataggtaaaaatggatggatatcacacaacat 151
           ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 677 cttgtggagtgatgaaaacattttgaaaatagataaaaatggatggatatcacacaacat 618

                                                                       
Query: 152 tgtgaaagtaacaatgctctggtcactgaattgtttacattaagatgattagtgttgtac 211
           |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 617 tgtgaaagtaacaatgctctggtcactggattgtttacattaagatgattaatgttgtac 558

                                                                       
Query: 212 tgcataattctcacctcaatgaaatgaaaaggaaagaaaaagtgaacagtgaaacagaac 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgcataattctcacctcaatgaaatgaaaaggaaagaaaaagtgaacagtgaaacagaac 498

                                                                       
Query: 272 aaaagaaaacacccccaagcaaacagaagtctttaagtcaaagtccctgaaaagatcaca 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaaagaaaacacccccaagcaaacagaagtctttaagtcaaagtccctgaaaagatcaca 438

                 
Query: 332 ggctgc 337
           ||||||
Sbjct: 437 ggctgc 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)