BAC Information

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BAC

Clone NameMSMg01-233G11
Chromosome2 (Build37)
Map Location 142,990,804 - 142,991,093
singlet/doubletsinglet
Overlap geneLOC668915
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneLOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233G11.T7 (MSMg01no233_g11.b1)MSMg01-233G11.TJ (MSMg01no233_g11.g1)
ACCAG399620AG399621
length745735
length of high quality
(start - end)		359 (382 - 740)290 (74 - 363)
definitionCHROMAT_FILE: MSMg01no233_g11.b1 PHD_FILE: MSMg01no233_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:06 2005CHROMAT_FILE: MSMg01no233_g11.g1 PHD_FILE: MSMg01no233_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGGAATACCGAATGGCAGAGAAACACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGACATGCAAATCAAAACAACCCTGAGATTC
CACCTCACAGCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTACCGGAGGATCTAGCAATACCTCTCCTGGGCAT
ATATCCAGAATATGTCCCAATGGCCACCAAGGACACATGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGA
AACTCACACAACATGTACTCACTGATAAGTGGATATTAGCCCCAAACCTA
GGATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAGAA
GAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAATTGG

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTTGGATACTAGTTCTCAGCAATAT
CTGGATTTATTTTTTAGCTTTCTCTTCTGTTTCATGGTGTCTTGTGTTTG
GGGGTTGGATGGTACCATGATATATGCCTTAATATCTGGCTGGAATAGCT
TCCCATGATTCATATTCTGAGTATTTATTTTCTTATTTTTATTTGAATTT
CAGAATAAGCTTTAAATAATTCATGATTCATTCATGAGAAACTCTTTTGG
CTATCTATTTTTCATGAGTTAAAATGTGTTGCAAATCTTTATCTCCAAGT
AGAAAATACATCTTCTTATTCCTGTGTACCATTTGAATATAATATAACCT
GAATATGACATTTCTCTATCCACTATAGGTTTTTTCTGCTTTCCATATAT
CACTATTTTAGTTTGTGCTATATGTGTAGAAGCAGACAGTGGGCTTTTAT
GTCAGTACCCACAAAACTTGCTGAATTCTGGTTCTGGATTTACTTTCCAG
TGTATTATTTTGGGATTTCCCAATAGAGAGAGACTGTTCTATTGGATCCA
TAGTAATCTCAGCATTTTTTCTCCATTTTAAAATTATCTTTCTTTCTTCT
TCAGCTTAAAGGCAATGGCTGGGACTGACAAAATGGTGACAGAGAACAGT
AGGACCTGCAGACATGCTTGCCTTGTCAAGGNTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_g11.g1 MSMg01no233_g11.g1 CHROMAT_FILE:
MSMg01no233_g11.g1 PHD_FILE: MSMg01no233_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:06 2005
         (290 letters)



>mm_chr2_142990604_142991293
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttggatactagttctcagcaatatctggatttattttttagctttctcttctgtttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttggatactagttctcagcaatatctggatttattttttagctttctcttctgtttc 260

                                                                       
Query: 61  atggtgtcttgtgtttgggggttggatggtaccatgatatatgccttaatatctggctgg 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 atggtgtcttgtgtttgggggttggatggtaccatgatatacgccttaatatctggctgg 320

                                                                       
Query: 121 aatagcttcccatgattcatattctgagtatttattttcttatttttatttgaatttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatagcttcccatgattcatattctgagtatttattttcttatttttatttgaatttcag 380

                                                                       
Query: 181 aataagctttaaataattcatgattcattcatgagaaactcttttggctatctatttttc 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 aataagctttaaataattcatgattcattcgtgagaaactcttttggctatctatttttc 440

                                                             
Query: 241 atgagttaaaatgtgttgcaaatctttatctccaagtagaaaatacatct 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgagttaaaatgtgttgcaaatctttatctccaagtagaaaatacatct 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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