BAC Information

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BAC

Clone NameMSMg01-233J21
Chromosome2 (Build37)
Map Location 124,020,462 - 124,020,739
singlet/doubletsinglet
Overlap genenone
Upstream gene4930517E11Rik
Downstream geneLOC100043360, Sema6d, LOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375, Slc12a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233J21.T7 (MSMg01no233_j21.b1)MSMg01-233J21.TJ (MSMg01no233_j21.g1)
ACCAG399764AG399765
length714714
length of high quality
(start - end)
239 (128 - 366)279 (74 - 352)
definitionCHROMAT_FILE: MSMg01no233_j21.b1 PHD_FILE: MSMg01no233_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:21 2005CHROMAT_FILE: MSMg01no233_j21.g1 PHD_FILE: MSMg01no233_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACTGAGGAATCTCGAATGTCCAAGAAATACCTAAGGAAATGT
TCAACATCCTCAGTCATCTTTGACCATGCTAATCAAAATGACCCTGAGAT
TCCACCTTATACCAACCAGAATGGCTAAAATAAAAAACTTGGGTGACAGA
CAGCAAATGCTAGTGAGGATGTGGAGAAAGAGGAACATTCCTCCATTCCT
GGTGGGAGTGCAAATTGGTAAAAACACTTTGGAAATTAATCTGGCAGTTC
CTCAGAAAATTGGAAATACATGTACCTGAAGACCCAGCTCTACCACTCCT
GGGCATATACCCTTATGATATACATATTCCACCATATCACAAGCACTTGT
GCTTCACTATGTTCAGAGCAGCCCTATTTATAATAGCCAGAATCTGGAAA
CAACCCAGATGTCCCTCAACAGAAGAATGGATACAGAAAATGTGGTACAT
TTACACAATAAAATACTAATCAGCTTTTAAAATGAGGAGATCATGAATGT
TGCAGGGAAATGGAATGAACTAGAAAATAACATCCTCACAAGAGACAGCT
GTATCAGGGTCCTGTCAGCAAAATCTTGCTGGCATATGCAATAGTGTCTG
AGTTTGGTGGCTGATTATGGGACAGATCCCCTGGGGGGCAGCTTCTGGAT
GGTCCTTCCTCCCN
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAGATATCATTTGAGAGTCAGGTCTC
TCTACTGTGTAAGTCCTAGGGACAAGTAAGACATCAGATTTAGAGGTAAG
CACTTTTTTTTTTCCAAAAAGAAAACAGCTTTATTGAATTTCCAGGGACT
CAAATTAGACAGGATAAAGGCATGCAGATGACACTAAAGACATGCAAATA
CCAACGACCCTTGGGGGACTCTCTAGCTCTCTCCCTTTTTACTCTTTCCT
TCTAGCTTGTTCTCTCTAGAGGTAAGCACTTTTACACACACCACTCAACA
CACTNANTTAGAGCACCAGATCCTAGCAGGCAAGGTCCAGGCCAAGTGAG
ATGCCCTCTTTCACAAATAAAAAAACAGAAATAGAGCAACAATATCCAAA
GTTGATCTCTGGCCTCCACAACATATATGCATACCTAGCTAAAGACAAAA
AGCCACAGGGGCCAAAGCTGTTGTTACCTGTGAAATGATACAATTTGTCG
GAACGTTGGGAATGGAAACCTAATAGAGATGCCAAAGCAACAATGCATTT
TGCCAGCTGCATTTACAGTTGTACCTTTAGCCCAACACTGGATGGTCAGG
ATACTTAGGAGCTGTAAGAGTAGAGAAGAGAGGTGGAACTCAGCCTCCGC
ATTAGCAGTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_j21.g1 MSMg01no233_j21.g1 CHROMAT_FILE:
MSMg01no233_j21.g1 PHD_FILE: MSMg01no233_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:21 2005
         (279 letters)



>mm_chr2_124020261_124020939
          Length = 679

 Score =  538 bits (278), Expect = e-157
 Identities = 278/278 (100%)
 Strand = Plus / Minus

                                                                       
Query: 2   aagatatcatttgagagtcaggtctctctactgtgtaagtcctagggacaagtaagacat 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aagatatcatttgagagtcaggtctctctactgtgtaagtcctagggacaagtaagacat 420

                                                                       
Query: 62  cagatttagaggtaagcacttttttttttccaaaaagaaaacagctttattgaatttcca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cagatttagaggtaagcacttttttttttccaaaaagaaaacagctttattgaatttcca 360

                                                                       
Query: 122 gggactcaaattagacaggataaaggcatgcagatgacactaaagacatgcaaataccaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gggactcaaattagacaggataaaggcatgcagatgacactaaagacatgcaaataccaa 300

                                                                       
Query: 182 cgacccttgggggactctctagctctctccctttttactctttccttctagcttgttctc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cgacccttgggggactctctagctctctccctttttactctttccttctagcttgttctc 240

                                                 
Query: 242 tctagaggtaagcacttttacacacaccactcaacaca 279
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tctagaggtaagcacttttacacacaccactcaacaca 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)