CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGGACCTTCCATTCACATGCAGCCATTGTTGGAATAGCTGGGCC
ACAGCCTGGAAGCCATTCTAATATACAATTATATATAATATGTATATAAT
GTAAAATATATTATATATGTATAATATATTATATACATACTAGAGAGAGA
GGGGAAGGGAGAGAGGCTCATTCCTTAAGTTCTGTTTCTCTAGAGAACAT
TGATCAATATACACAGAGACATAATTAAAATAAATCTTAAAAATGAAATG
TGAAACTACATATGAAATGCTTGAAGAATCTAACACAGTTGCTTATTCCC
TCCACACTGAAAAAATAGTTATGTGGGGGCAGTGGACCCAGCCTGAGTTG
AATCCCAGACCTACAACATCCTAATACATTAGCACACATTTTAGTATCCT
CTTCTGTTAAATGGAGATAGTAATGATACATTTCTTCTAACCTATTCTGA
CAAATATGAAGCACTACTTAATGAGATTGTTTATTATGTTTTAAGCACAT
AACAGCTATCAGTCTGAACCTTTCTTACTTGTTACTTTCAATATACAGGT
ATTTATCTCACCATTAGGAATATTGCAGCAGAGAAAAAAATCTCCTTATG
AAGATTTCACTTTAGCTTTGAAAAGCAAATAGTATAAAAGATGTTAATAG
GTGATGGATACGTAAGATAGAGATAGAAGGATGGATGGN

GCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGGAAAGATATTGTGTGAATTTG
GTTTTGTCATGAAATACCTTGGTTTATCCATCTATGGTAATTGAGAGTTT
TGTTAGGTTTAGTAGCCTGGGCTGACATTTGTGTTCATTTAAGGTCTGTA
TAACATCTGTCAAGGCTCTTCTTGCTTTCATAGTCTCTGGTGAGAAGTCT
CATGTAATTATCACAGGTCTGCCTTTATATGTTACTTGACCTTTCCCCCT
TATTGCTTTTAATATTCTATCTTTATTTAGTGTGCCTGTTGTTCTGATTA
TAATGTGTTGAGAGGAGTTTCTTTTCTGGTCCAGTCTATTTGGAATTCTA
TAGGCTTCCTGCATGCTCATGTGCATCTCTTTCTTTAGGTTAGGGAAGTT
TTTTTTCTATAATTTTATTGAGATATTTACTGGTCCTTTAAGTTGAAAAT
CTTCATTCTCATCTATATCTATATTCCTTAGGTTTGGTTTTATTGTTCTG
TCCTGGATTTCCTGGATGTTTTAAGTTAGGGTTTTTTTTTTTTTTTTTTT
TGCATTTTCTTTGATTGTTGTGTCCATGTTCTCTATGGAATCTTCTGCAT
CTGAGATTCTCTCTTCCATCTCTTGTATTCTGTTGCTGATGCTTGATCTA
TGGCTCCTGATTTCTTTCCTAGGATTTCTT

Query= MSMg01no233_k23.b1 MSMg01no233_k23.b1 CHROMAT_FILE:
MSMg01no233_k23.b1 PHD_FILE: MSMg01no233_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:26 2005
         (694 letters)



>mm_chr2_21386494_21387587
          Length = 1094

 Score = 1185 bits (613), Expect = 0.0
 Identities = 676/707 (95%), Gaps = 20/707 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctggaccttccattcacatgcagccattgttggaatagctgggccacagcctgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 gaattcctggaccttccattcacatgcagccattgttggaatagctgggccacagcctgg 749

                                                                       
Query: 65  aagccattctaatatacaattatatataatatgtatataatgtaaaatatattatatatg 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 748 aagccattctaatatagaattatatataatatgtatataatgtaaaatatattatatgtg 689

                                                                       
Query: 125 tataatatattatatacatactagagagagaggggaagggagagaggctcattccttaag 184
           ||||||||||| |||| |||||  |||||||||||||||||||||| |||||||||||||
Sbjct: 688 tataatatattgtatatatact--agagagaggggaagggagagagactcattccttaag 631

                                                                       
Query: 185 ttctgtttctctagagaacattgatcaatatacacagagacataattaaaataaatctta 244
           ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 630 ttctgtttctctagagaacattgattaatatacatagagacataattaaaataaatctta 571

                                                                       
Query: 245 aaaatgaaatgtgaaactacatatgaaatgcttgaagaatctaacacagttgcttattcc 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aaaatgaaatgtgaaactgcatatgaaatgcttgaagaatctaacacagttgcttattcc 511

                                                                       
Query: 305 ctccacactgaaaaaatagttatgtgggggcagtggacccagcctgagttgaatcccaga 364
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 510 ctccacactgaaataatagttatgtgggggtagtggacccagcctgagttgaatcccaga 451

                                                                       
Query: 365 cctacaacatcctaatacattagcacacattttagtatcctcttctgttaaatggagata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cctacaacatcctaatacattagcacacattttagtatcctcttctgttaaatggagata 391

                                                                       
Query: 425 gtaatgatacatttcttctaacctattctgacaaatatgaagcactacttaatgagattg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gtaatgatacatttcttctaacctattctgacaaatatgaagcactacttaatgagattg 331

                                                                       
Query: 485 ttt---at----------t---atgttttaagcacataacagctatcagtctgaaccttt 528
           |||   ||          |   ||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tttagaatactcagtacctggcatgttttaagcacataacagctatcagtctgaaccttt 271

                                                                       
Query: 529 cttacttgttactttcaatatacaggtatttatctcaccattaggaatattgcagcagag 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cttacttgttactttcaatatacaggtatttatctcaccattaggaatattgcagcagag 211

                                                                       
Query: 589 --aaaaaaatctccttatgaagatttcactttagctttgaaaagcaaatagtataaaaga 646
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 aaaaaaaaatctccttatgaagatttcactttagctttgaaaagcaaatagtataaaaga 151

                                                          
Query: 647 tgttaataggtgatggatacgtaagatagagatagaaggatggatgg 693
           ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 150 tgttaataggtgatggataggtaagatagagatagaaggatggatgg 104


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space:   741456
Effective search space used:   741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)