BAC Information

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BAC

Clone NameMSMg01-233M17
Chromosome2 (Build37)
Map Location 39,739,326 - 39,823,060
singlet/doubletdoublet
Overlap genenone
Upstream geneNr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
Downstream geneLOC100042604, Magmas-ps, LOC666531, Lrp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233M17.T7 (MSMg01no233_m17.b1)MSMg01-233M17.TJ (MSMg01no233_m17.g1)
ACCAG399882AG399883
length754757
length of high quality
(start - end)		709 (46 - 754)665 (84 - 748)
definitionCHROMAT_FILE: MSMg01no233_m17.b1 PHD_FILE: MSMg01no233_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:35 2005CHROMAT_FILE: MSMg01no233_m17.g1 PHD_FILE: MSMg01no233_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,822,356 - 39,823,060)(39,739,326 - 39,739,988)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACTATAATGAGTGCTCTGGTTATAACTAAGTGGGTATACAAAAG
GACCTCTAACCAAAAATTTAATATCACCTACCTTTCACTTTGTTTTGTGA
AGTACATTTTACTTATTATGGTATCTTACTGTTTTCTTATAAATCACTGC
TAATTGAATAGTCCATTATTCTGTTTCTTGTACTCTACCTCACCCTAAAA
GTCATTTCATTTGTAGTACCTACACCATATCCACATGTTTGATGTAGAAT
CTATGTAGCTTTCAATATCACTTTCATTGACTCATTTAGTTAAAATGTTT
TAAGGATTATACAACATTTCAAAGTGCAAAACTTAAAAAATATACATGCA
ACATGACAGAAAAAGGACAGATCCATAGAACAAGTCATATTTATATTTAA
GGTTTTGATTTTGTTTTGTTATCTGGAGATGTAACCCAACACCTCACACA
TTCCAGGGAAATGTTCTGTCTATTAAGAAAACAGTCAGACAACATAATAA
GTAAAATACACTTACTTCACACTGTTATTTTATTACTCTGTTATAAATTA
CTCTGTTATTTCATTTCCTTTACCCCAATACTTACAATTCTTTAATCACA
ACAAAGGCTACTGTGCTATGTTGTAGCACTCAAGCCAGGTGAAAAATGTG
TCTTTGTTGAAATTTCTTCTTTGTAAGTACAGTACAGTTTCTGCTATTTC
ATTA

CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCAAGGAGTTCCATATC
TAGTGTTATATGAATATGGCTTGCATAATTTGAAGGTTTATGGCCTCCTC
ACTGTTGCTGTTTCAAATAAAATATCAACTGCAGAACATAATTTTGGTAA
AAACTATTGCTGCCGTCTATCACATTAATAGGCATTTAGTGACTAGATTA
ATGGAAGCAATTAACCTGCCATGCTTTGTAGTGAGTTAGCAATAGCTAGA
GTTGTAGGTTAAATATGGTGCTACATATTTAGAAGCATATAAGATGTAGT
TTTTGAGAGGAGTGTTGAAAAGATAGTTATACAATGAAAATGTTGTACAG
ATAGAAAATATTTGAGTTAGGTAGTTGTTTTGAAATCATAAAGAATGAGA
GAGGAGATCCAATGCAGTAAAATTGATAAGACACATAATTGATAAGAAGC
AGTTATAAAACCTATCTCTATATAAAATCATGGCATAATTAACATCTTAT
TACAAAAAGGGTTCTACTTTATTTACTTTTGTGGTAGCAAAAATATGTGT
TATTAAACTTATATAATAAAGATGTTTTACACCAAATTGGAAGTTGGAAT
GATAAATTTCTGTATATATCTGACAATAGCTGCCTTCTATTCTTGTATCT
TTTATCCACTCAGACATTTTAACATGATCAAGTTTCTGTTTTCTAGAAAG
AAAATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_m17.b1 MSMg01no233_m17.b1 CHROMAT_FILE:
MSMg01no233_m17.b1 PHD_FILE: MSMg01no233_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:35 2005
         (709 letters)



>mm_chr2_39822152_39823260
          Length = 1109

 Score = 1363 bits (705), Expect = 0.0
 Identities = 705/705 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccactataatgagtgctctggttataactaagtgggtatacaaaaggacctctaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 gaattccactataatgagtgctctggttataactaagtgggtatacaaaaggacctctaa 850

                                                                       
Query: 65  ccaaaaatttaatatcacctacctttcactttgttttgtgaagtacattttacttattat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 ccaaaaatttaatatcacctacctttcactttgttttgtgaagtacattttacttattat 790

                                                                       
Query: 125 ggtatcttactgttttcttataaatcactgctaattgaatagtccattattctgtttctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ggtatcttactgttttcttataaatcactgctaattgaatagtccattattctgtttctt 730

                                                                       
Query: 185 gtactctacctcaccctaaaagtcatttcatttgtagtacctacaccatatccacatgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gtactctacctcaccctaaaagtcatttcatttgtagtacctacaccatatccacatgtt 670

                                                                       
Query: 245 tgatgtagaatctatgtagctttcaatatcactttcattgactcatttagttaaaatgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tgatgtagaatctatgtagctttcaatatcactttcattgactcatttagttaaaatgtt 610

                                                                       
Query: 305 ttaaggattatacaacatttcaaagtgcaaaacttaaaaaatatacatgcaacatgacag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ttaaggattatacaacatttcaaagtgcaaaacttaaaaaatatacatgcaacatgacag 550

                                                                       
Query: 365 aaaaaggacagatccatagaacaagtcatatttatatttaaggttttgattttgttttgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aaaaaggacagatccatagaacaagtcatatttatatttaaggttttgattttgttttgt 490

                                                                       
Query: 425 tatctggagatgtaacccaacacctcacacattccagggaaatgttctgtctattaagaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tatctggagatgtaacccaacacctcacacattccagggaaatgttctgtctattaagaa 430

                                                                       
Query: 485 aacagtcagacaacataataagtaaaatacacttacttcacactgttattttattactct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aacagtcagacaacataataagtaaaatacacttacttcacactgttattttattactct 370

                                                                       
Query: 545 gttataaattactctgttatttcatttcctttaccccaatacttacaattctttaatcac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gttataaattactctgttatttcatttcctttaccccaatacttacaattctttaatcac 310

                                                                       
Query: 605 aacaaaggctactgtgctatgttgtagcactcaagccaggtgaaaaatgtgtctttgttg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aacaaaggctactgtgctatgttgtagcactcaagccaggtgaaaaatgtgtctttgttg 250

                                                        
Query: 665 aaatttcttctttgtaagtacagtacagtttctgctatttcatta 709
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aaatttcttctttgtaagtacagtacagtttctgctatttcatta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space:   768201
Effective search space used:   768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no233_m17.g1 MSMg01no233_m17.g1 CHROMAT_FILE:
MSMg01no233_m17.g1 PHD_FILE: MSMg01no233_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:35 2005
         (665 letters)



>mm_chr2_39739124_39740188
          Length = 1065

 Score = 1251 bits (647), Expect = 0.0
 Identities = 659/663 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   aaggagttccatatctagtgttatatgaatatggcttgcataatttgaaggtttatggcc 62
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 203 aaggagttccatatctagtgttatatgaatatggtttgcataatttgaaggtttatggcc 262

                                                                       
Query: 63  tcctcactgttgctgtttcaaataaaatatcaactgcagaacataattttggtaaaaact 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcctcactgttgctgtttcaaataaaatatcaactgcagaacataattttggtaaaaact 322

                                                                       
Query: 123 attgctgccgtctatcacattaataggcatttagtgactagattaatggaagcaattaac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 attgctgccgtctatcacattaataggcatttagtgactagattaatggaagcaattaac 382

                                                                       
Query: 183 ctgccatgctttgtagtgagttagcaatagctagagttgtaggttaaatatggtgctaca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctgccatgctttgtagtgagttagcaatagctagagttgtaggttaaatatggtgctaca 442

                                                                       
Query: 243 tatttagaagcatataagatgtagtttttgagaggagtgttgaaaagatagttatacaat 302
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tatttagaagcatttaagatgtagtttttgagaggagtgttgaaaagatagttatacaat 502

                                                                       
Query: 303 gaaaatgttgtacagatagaaaatatttgagttaggtagttgttttgaaatcataaagaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaaaatgttgtacagatagaaaatatttgagttaggtagttgttttgaaatcataaagaa 562

                                                                       
Query: 363 tgagagaggagatccaatgcagtaaaattgataagacacataattgataagaagcagtta 422
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 563 tgagagaggagatccaatgcagtaaaattgataagacacataattgataagaagtagtta 622

                                                                       
Query: 423 taaaacctatctctatataaaatcatggcataattaacatcttattacaaaaagggttct 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 taaaacctatctctatataaaatcatggcataattaacatcttattacaaaaagggttct 682

                                                                       
Query: 483 actttatttacttttgtggtagcaaaaatatgtgttattaaacttatataataaagatgt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 actttatttacttttgtggtagcaaaaatatgtgttattaaacttatataataaagatgt 742

                                                                       
Query: 543 tttacaccaaattggaagttggaatgataaatttctgtatatatctgacaatagctgcct 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 743 tttacaccaaattggaagttggaatgataaatttctgtatatatctgacaatagcagcct 802

                                                                       
Query: 603 tctattcttgtatcttttatccactcagacattttaacatgatcaagtttctgttttcta 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tctattcttgtatcttttatccactcagacattttaacatgatcaagtttctgttttcta 862

              
Query: 663 gaa 665
           |||
Sbjct: 863 gaa 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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