BAC Information

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BAC

Clone NameMSMg01-234B12
Chromosome2 (Build37)
Map Location 24,742,218 - 24,742,508
singlet/doubletsinglet
Overlap geneEhmt1
Upstream geneHnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b
Downstream geneArrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234B12.T7 (MSMg01no234_b12.b1)MSMg01-234B12.TJ (MSMg01no234_b12.g1)
ACCAG400090AG400091
length1,027731
length of high quality
(start - end)		---290 (56 - 345)
definitionCHROMAT_FILE: MSMg01no234_b12.b1 PHD_FILE: MSMg01no234_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:58 2005CHROMAT_FILE: MSMg01no234_b12.g1 PHD_FILE: MSMg01no234_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTTTTTCTTCTTNNTTTTNTNTTTCTCGTCTTCTCCCCCTGCCTCNTT
TGTTATTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGG
GACCGCGCGAATTCCCGGCTCACGCGCGACTGTAAGCGCTGAGCCGCACG
TTAAAGTCCAGAAGTCTGAGATCCTGCTACAGTACTTAGATTGCACACAG
TGAAAGCATTGGTGCTCAGCCACGGTTCTTAGCTGGTTTCCTTGCAGCGA
AATTGTTTGTCCGCTGCCTAATTCACGCACAAATATACTATGTTGTTAAG
TTGAGTAGTGTAAATCCCGGTTGCCGCCACACAGATGGCAGCTTACTTTA
CTATTAATTGTGGACAGATCTCCCACGCCCGACTTTCTCTTCCTGTGATG
ATTTTGGTGGGTGTCTGGTTGTGATGTACTCTGTCTCCGTGTCCCCTTCT
ACCTGTGGATACGACGGGACTTATGTTATTTTGTTTGGGATCTTGCCTGC
TTGCACTCGGATGGCTGCATAACGCCACGATTTTCTCTCTGTGTGCGATT
TCGCGCGGTGCGAATGTTATATCTAGTATGCACCTCTAGAGCACAGGAAT
AGTAATAATAAATATCATATACTACTGATACGGGAAACATCGAGATAGGA
CGGATACTTCGCTTGCTGACTCTAGACGTGGCAAAGCCCTCTGTTTCCAA
GAGGGACGTCGCATGATATGAAGGCACACGCTTTCGTGACTGCCGCATCT
TTCCCTCGATAAAGAATATCATTCGGTAAAAATATGGGCATATATGATAA
TGTAGATAGAAATAAACTCTAATTTACTGTATACTGAAATTTTATCGCGT
TGTGTATACTTTTACAATTGCTGGCGCTAGGAGGGGTATGTTTTCTCGCG
CCGATTACAGCGCCACGACGTGAGTGAATCTCTGAGAGGCAATATAGATA
GATGATTTGTACTTATTACTCTGTACGTGCAACATGATACTTTTTCTTAA
CGTATTAATGGATTGGAGTGGCGTGTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACCGGACAGGAGAGGGGCTTTGCTGTATACACCTTTCCCTCTCCA
GCCTTTTCAGTTTCTTGGAATTTATCTAGGGTTACAGTATAATTTTTAAT
TTCTCCCATTCCTGAACAGACACATGTATATGCATGCGTGAGCGTGTGCT
CGCACACAGTCAGACAGACAGACACACACACACACTTACTTCTGTTTTAG
ATCTGCATGATAGGTTTGTCTCATGCCTTGTCAGTGAGCTTGTCTACACA
GTAGTGATTTACTTGTTTTGTAGTGTCAGTCTTACTTCTGTTGCTCTTCT
GNTACCCGATTCATGGTCCTTAGTTCTCTTGCCAGGGTAAAGCACACTAA
CAAAAAGCATCTTAAAAGAAAAAAAGGGTTTAAATCCTAGGTTATTGACT
ATCATTTTTCAGAAGTCCAAGGCAGGATCTCAAGCAGCTGGCTGGTCATT
TCATATCTGACCAATAGCAGAGAGAAATAAACACCCCTGTCCTGCCTACT
TGTTTGCTTTTAGTTGTCTTTCTGTAGTCCAGGGCCCAGTCTGTGGACGG
TGCTATGGTGGGCTAGGTTTTCCTATATCAATTAAAAATTAAGGACTGGA
GAGATGGCTCAGCGGTTAAGGGCATTGGCTGCTCTTTCCAGAGGGCCTGA
ATTCAATTCCCAGCAAACATTTGGAGGGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_b12.g1 MSMg01no234_b12.g1 CHROMAT_FILE:
MSMg01no234_b12.g1 PHD_FILE: MSMg01no234_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:58 2005
         (290 letters)



>mm_chr2_24742018_24742708
          Length = 691

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%), Gaps = 1/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   accggacaggagaggggctttgctgtatacacctttccctct-ccagccttttcagtttc 59
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 491 accggacaggagaggggctttgctgtatacacctttccctctcccagccttttcagtttc 432

                                                                       
Query: 60  ttggaatttatctagggttacagtataatttttaatttctcccattcctgaacagacaca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttggaatttatctagggttacagtataatttttaatttctcccattcctgaacagacaca 372

                                                                       
Query: 120 tgtatatgcatgcgtgagcgtgtgctcgcacacagtcagacagacagacacacacacaca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgtatatgcatgcgtgagcgtgtgctcgcacacagtcagacagacagacacacacacaca 312

                                                                       
Query: 180 cttacttctgttttagatctgcatgataggtttgtctcatgccttgtcagtgagcttgtc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cttacttctgttttagatctgcatgataggtttgtctcatgccttgtcagtgagcttgtc 252

                                                              
Query: 240 tacacagtagtgatttacttgttttgtagtgtcagtcttacttctgttgct 290
           ||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 251 tacacagtagtgacttacttgttttgtagtttcagtcttacttctgttgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space:   191642
Effective search space used:   191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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