Query= MSMg01no234_n10.b1 MSMg01no234_n10.b1 CHROMAT_FILE:
MSMg01no234_n10.b1 PHD_FILE: MSMg01no234_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:57 2005
(330 letters)
>mm_chr2_104630357_104631085
Length = 729
Score = 547 bits (283), Expect = e-160
Identities = 315/327 (96%), Gaps = 4/327 (1%)
Strand = Plus / Minus
Query: 4 ggaattcactttgtagaccaagctggcctcgaactcagaaatccgccttcctctgcctcc 63
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 616 ggaattcactttgtagaccaggctggcctcgaactcagaaatccaccttcctctgcctcc 557
Query: 64 tgagtgctaggattaaaggcgtgcgccaccacacctggcaatatttagtgttttaatgtt 123
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgagtgctaggattaaaggcatgcgccaccacacctggcaatatttagtgttttaatgtt 497
Query: 124 ttgtacattttactttattttgtgttaggaagttagagtatattaattgccagagagtta 183
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 496 ttgtacattttactttattttgtgttaggaagttagagtatatcaattgccagagagtta 437
Query: 184 tgtacatttttactggctttttaattttcatatggcatttgtccagttccatatatgtaa 243
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 436 tgggcatttttactggcttcttaattttcatatggcatttgtccagttccatatatgt-a 378
Query: 244 actcacctatttaagcataatgaatataaattgctgcttctttcagaactttgatttttg 303
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 377 actcacctatttaagcataatgaatataaattgctgcatctttcagaactttgatttttg 318
Query: 304 ttttaagaaagca---aattttttttt 327
||||||||||||| |||||||||||
Sbjct: 317 ttttaagaaagcaaacaattttttttt 291
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 729
Length adjustment: 9
Effective length of query: 321
Effective length of database: 720
Effective search space: 231120
Effective search space used: 231120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no234_n10.g1 MSMg01no234_n10.g1 CHROMAT_FILE:
MSMg01no234_n10.g1 PHD_FILE: MSMg01no234_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:57 2005
(287 letters)
>mm_chr2_104478786_104479472
Length = 687
Score = 547 bits (283), Expect = e-160
Identities = 286/287 (99%)
Strand = Plus / Plus
Query: 1 cagttttagggaaccaacacctctctgacttccttggtcacatagaaacacatatattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagttttagggaaccaacacctctctgacttccttggtcacatagaaacacatatattca 260
Query: 61 cattaaaatatatgcttctgagtttaaatctttagaggccacataaaacttgagtacatc 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 cattaaaatatatgcttctgagtttaaatccttagaggccacataaaacttgagtacatc 320
Query: 121 atatctggaatcttaggcagagacaggtgatagatccctggcgctcattaacagctagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatctggaatcttaggcagagacaggtgatagatccctggcgctcattaacagctagcc 380
Query: 181 tagtccagtcagcaaacttcaggaacagtgaggtcctgcttcaaaaccaggacagagggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtccagtcagcaaacttcaggaacagtgaggtcctgcttcaaaaccaggacagagggg 440
Query: 241 caatgagattgtttagcaggtaagagagtgctttgctcatgaagcct 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatgagattgtttagcaggtaagagagtgctttgctcatgaagcct 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
