Query= MSMg01no235_a18.b1 MSMg01no235_a18.b1 CHROMAT_FILE:
MSMg01no235_a18.b1 PHD_FILE: MSMg01no235_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:16 2005
(310 letters)
>mm_chr2_113315205_113315915
Length = 711
Score = 524 bits (271), Expect = e-153
Identities = 298/307 (97%), Gaps = 1/307 (0%)
Strand = Plus / Minus
Query: 5 gaattcaactttctgcggaacaaacacacaagaacttctgtccacaaagttccttttaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaattcaactttctgcggaacaaacacacaagaacttctgtccacaaagttccttttaat 452
Query: 65 caagcacttaagctaactcagggcttcccttggtggcttcctgatctgctc-aaagtaat 123
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 451 caagcacttaagctaactcagggcttcccttggtggcttcctgatctgctcaaaagtaat 392
Query: 124 ggggcatcttttctgctgccgaatgccttggcagagtctccaatttgccaaaggcagaat 183
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 391 ggggcatcttttctgctgccgaatgccctggcaaagtctccaatttgccaaaggcagaat 332
Query: 184 cagaaacgatttcagtaattcagaagatacaggcccaccacagctgtagtctacacctgt 243
|||||| ||||| | |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cagaaatgatttaaataatacagaagatacaggcccaccacagctgtagtctacacctga 272
Query: 244 ctgtgttcacatcagtcagtatgaaacggcagccactcttttatatagtgctggcctcgg 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 271 ctgtgttcacatcagtcagtatgaaacggcagccactcttttatatagtgctggcctcag 212
Query: 304 gaacaga 310
|||||||
Sbjct: 211 gaacaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 711
Length adjustment: 9
Effective length of query: 301
Effective length of database: 702
Effective search space: 211302
Effective search space used: 211302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_a18.g1 MSMg01no235_a18.g1 CHROMAT_FILE:
MSMg01no235_a18.g1 PHD_FILE: MSMg01no235_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:16 2005
(282 letters)
>mm_chr2_113179694_113180375
Length = 682
Score = 514 bits (266), Expect = e-150
Identities = 278/282 (98%)
Strand = Plus / Plus
Query: 1 caatgagggcaaaaattatgagattatgaaaattattaaaaattatctcatatgataatt 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 201 caatgagggcaaaaattatgagattatgaaaatgattaaaaattatctcatatgatgatt 260
Query: 61 cccattattaaccatattattccagacattatatacctgaatatttgtaaatatttgtgt 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 cccattattaaccatattattccagacattatatacctggatatttgtaaatatttgtgt 320
Query: 121 aagaatgaataaacaaatataatgaaaataatataatttttgtaagtccaacaaactaaa 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgaatgaataaacaaatataatgaaaataatataatttttgtaagtccaacaaactaaa 380
Query: 181 gcaaatgaaactaaactaataatgaaatttcaactcaattgacctcattttcagatatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaaatgaaactaaactaataatgaaatttcaactcaattgacctcattttcagatatgt 440
Query: 241 tatatctctgaacactctggctaaaaataatatgaattttgg 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatatctctgaacactctggctaaaaataatatgaattttgg 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
