Query= MSMg01no235_b20.b1 MSMg01no235_b20.b1 CHROMAT_FILE:
MSMg01no235_b20.b1 PHD_FILE: MSMg01no235_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:21 2005
(646 letters)
>mm_chr2_178063091_178064140
Length = 1050
Score = 1199 bits (620), Expect = 0.0
Identities = 638/646 (98%), Gaps = 4/646 (0%)
Strand = Plus / Minus
Query: 5 gaattctttgcgcgtgcatgttctttctgtctttgttcatttccaagcttattctctgtt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 gaattctttgcgcgtgtatgttctttctgtctttgttcatttccaagcttattctctgtt 791
Query: 65 tagttatcaagactctaatgcatgtacagtaagtccagtggcctccaaatgtaggctttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tagttatcaagactctaatgcatgtacagtaagtccagtggcctccaaatgtaggctttc 731
Query: 125 ----tatatatatatatatagagagagagagatttttccccagtagtctacacaagaggg 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 730 tatatatatatatatatatagagagagagagatatttccccagtagtctacacaagaggg 671
Query: 181 ggtaggtagttttaaggctaaggatagtattaaggctaagacagagaagaatgggtttgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ggtaggtagttttaaggctaaggatagtattaaggctaagacagagaagaatgggtttgc 611
Query: 241 ttgcatgttcaaatcaagattctctggcctctctgatagaaccaggtcagtcttggtgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttgcatgttcaaatcaagattctctggcctctctgatagaaccaggtcagtcttggtgct 551
Query: 301 gttacaacttttaaaaagatgatcacaaacaaagaacactcgggcaagtagagtgtgcaa 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 550 gttacaacttttaaaaagatgatcacaaacaaagaacactcaggcaagtagagtgtgcaa 491
Query: 361 cacacagcgaggaacaagcttaagagtcacaccactgaactgatccaaggatgaccaaca 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cacacagcgagggacaagcttaagagtcacaccactgaactgatccaaggatgaccaaca 431
Query: 421 cattttgcggaaaaagactttaaaaactagtcctagtagacaggcactactcagggctcg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cattttgcggaaaaagactttaaaaactagtcctagtagacaggcactactcagggctcg 371
Query: 481 tctgagggttggctaccttccatcatccaagaccatgaaacttccatacagtggacatta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tctgagggttggctaccttccatcatccaagaccatgaaacttccatacagtggacatta 311
Query: 541 ttgctggacatctgggctcagtacactccagattcacgcctaattggggaaacaaggcca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttgctggacatctgggctcagtacactccagattcacgcctaattggggaaacaaggcca 251
Query: 601 gaggtacagagggtgctggaatccaaagttctgagccacggaagtt 646
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gaggtacagagggtgctggaatccaaagttctgagccacggaagtt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1050
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1040
Effective search space: 661440
Effective search space used: 661440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_b20.g1 MSMg01no235_b20.g1 CHROMAT_FILE:
MSMg01no235_b20.g1 PHD_FILE: MSMg01no235_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:21 2005
(650 letters)
>mm_chr2_177989219_177990269
Length = 1051
Score = 1120 bits (579), Expect = 0.0
Identities = 633/651 (97%), Gaps = 1/651 (0%)
Strand = Plus / Plus
Query: 1 gggctggttttcctctcttgacaaccaccaaagttaacgatagtcatactcttatgtcca 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 gggctggttttcctctcttgacaaccaccaaagttaacgatagtcatactcttacgtcca 260
Query: 61 ggtatgagcctaggaagcatgatcctatctgaattcatttcggggatgccatcacagtaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 ggtatgagcctaggaagcatgatcctatctgaattcatttcggggatgccgtcacagtaa 320
Query: 121 agcaaagtatgtcctcaaaagtgaggacaaaaagag-cccctgtctatcttttcatgcct 179
||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 321 agcaaagaatgtcctcaaaagtgaggacaaaaagagccccctgtctatcatttcatgcct 380
Query: 180 atgcaaaattggacatgcacaaaatctggtgcattatgggaagggacatgcacagtagag 239
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 atgcaaaattggacatgcacaaaatccggtgcattatgggaagggacatgcacagtagag 440
Query: 240 aaatgactacatgacctaatttgtcagaatagagaacagcactcatgtgcctctccgtaa 299
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 aaatgactacacgacctaatttgtcagaatagagaacagcactcatgtgcctctcggtaa 500
Query: 300 ctggtccttccttctcttgaacccacaaaaggaacccaagatagtgttactgggtccttg 359
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 ctgatccttccttctcttgaacccacaaaaggaacccaagatagtgctactgggtccttg 560
Query: 360 acttgtgggacctgctcttcccttgcatccctctgcttaagtaaagctccctcactactt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acttgtgggacctgctcttcccttgcatccctctgcttaagtaaagctccctcactactt 620
Query: 420 ttgcaaataccagttggcttttatgtcaggtcctcgaataggagaccaggagttcaggaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 ttgcaaataccagttggcttttatgtcaggtcctcgaataggagaccaggagtccaggaa 680
Query: 480 cacctcacccagaccctgaccacaggaaacaggctaacctgcaggatgctacctatgtct 539
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 cacctcacccagaccctgaccacaggaaataggctaacctgcaggatgctacctatgtct 740
Query: 540 aacatggcacaccgcgctacctggaatttcccagaacatctatgtgcaccctccacggtg 599
| |||||||||| || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agcatggcacactgccctatttggaatttcccagaacatctatgtgcaccctccacggta 800
Query: 600 tgcacctgtttttaagtcaccagccaggaggacccaagggcaaagatactt 650
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgcacctgtttttaagtcaccagccaggaggacccaagggcaaagatactt 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1051
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1041
Effective search space: 666240
Effective search space used: 666240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
