CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGGGGTGTCTTTGGTGAAAGAAGGGACTCTCTGGAGAGTGCTTT
TGCTCTCTTAAGTCCCTGCGGTACATTGCCACTAGAGCAACCTGCTTCCA
CGTTTAAAACACCTCCTAGCTCATTTCCCTACATATACATGTTTACCCTT
ATGTATAACACTAATCTTGCTTTTGTTTTTATTAGTGATTCATGTTTAAA
GTTTATTAAAGAGAAAAGGCTGTAGACATTTTTCTTGAGCATTAAATAAC
ACTGATCTCATTTTCTACAAAGCTGTCACTAGTCATTTTATCAGAACCAA
AAATCAAAAAAAAAAGGTATAAACCTCATCATCATTAAAACTAAAAAATA
AATTAAACAAAAACAAAACCCAAAAGAACTAGGTTCAGAGTGATAAATTC
TTGAAGGAAGTGGAGGGCTTAGAAGAGCCTAATGGTGTTTTTCAGTTTCT
AAAGTGCCTCGTGTTCTTATATTTAACTGGGCTTCAAAGATTTAAGTAGA
ATCTATCATCCTTGGGACATCAATAAAACCCAAAGCAAGCCATGGCTGCT
GTAGGCGCTCCCAGGAAATCCTTATTTAACATCGACTTCGTTTACAGTGG
CTCTGTGCTTTCATTTCCTCTGAGTTAAAGCCCACAGTCTCATTTCTGCT
TCCTTCCCCTA

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGACATAGCTAAAGCCTTCTGCCAG
TGTTCCAACAGTCCTAGAACATCCCTGACCAAGATCAAGGGCTTGGAATT
CAATAAGATTGTAAAAGCTAAGTCACTCCCTTACACAGGAATTTATCATC
ACTAAGGAAGAAGGAAGTTTCAGACCAAAGGAGAAACCAGAAACTATAGC
AGAGTTACACCCATACACATGTATTTACAATGGCCTAAGGGGAAGGTGGA
CTATACAAGAGACTAAAATAGGAACTATGGCAAGGGCACGAAGCCCATCA
CCCTGGCTTCTAAGATTAGTGAATCTTACGTGGAGCCCTTGTTGATCCCA
GCTGTTATCAATGAATTCCATCCCAGGTGGTTCCTGTTAGACCTTTTGTG
TTTGCATTCCTCTGTTTTATGTAAGATTCCAGTTACCTCAATTGTACCTT
GTGAATATGTCACCCAACTTCCTTATTGTCCTCTACATAAAAAGTCTGAT
GCTCGATTTGAAAATTACACTCAGATTCCACATGATCTCTCCTGTGTGTG
TCTGTTTGTCATTCATCCATGCTTTGCCCACCCGTGTTGAGAGACCTGTT
CCACGAAGACACAGGGACCCAGAGGGTCTGCGGCAAATTGTATCTCAAAA
TTCAAGCATCT

Query= MSMg01no235_d15.b1 MSMg01no235_d15.b1 CHROMAT_FILE:
MSMg01no235_d15.b1 PHD_FILE: MSMg01no235_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:30 2005
         (666 letters)



>mm_chr2_57549746_57550812
          Length = 1067

 Score = 1207 bits (624), Expect = 0.0
 Identities = 653/668 (97%), Gaps = 11/668 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctggggtgtctttggtgaaagaagggactctctggagagtgcttttgctctctt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 gaattcctggggtgtttttggtgaaagaagggactctctggagagtgcttttgctctctt 808

                                                                       
Query: 65  aagtccctgcggtacattgccactagagcaacctgcttccacgtttaaaacacctcctag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 aagtccctgcggtacattgccactagagcaacctgcttccacgtttaaaacacctcctag 748

                                                                       
Query: 125 ctcatttccctacatatacatgtttacccttatgtataacactaatcttgcttttgtttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ctcatttccctacatatacatgtttacccttatgtataacactaatcttgcttttgtttt 688

                                                                       
Query: 185 tattagtgattcatgtttaaagtttattaaagagaaaaggctgtagacatttttcttgag 244
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 687 tattagtgattcatgtttaaagtttattaaaaagaaaaggctgtagacatttttcttgag 628

                                                                       
Query: 245 cattaaataacactgatctcattttctacaaagctgtcactagtcattttatcagaacca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cattaaataacactgatctcattttctacaaagctgtcactagtcattttatcagaacca 568

                                                                       
Query: 305 aaaatcaaaaaaaaaaggtataaacctcatcatcattaaaactaaaaaataaattaaac- 363
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 567 aaaatc--aaaaaaaaggtataaacctcatcatcattaaaactaaaaaataaattaaaca 510

                                                                       
Query: 364 -----aaaaacaaaacccaaaagaactaggttcagagtgataaattcttgaaggaagtgg 418
                ||||| ||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aaaaaaaaaaaaaaa---aaaagaactaggttcagagtgataaattcttgaaggaagtgg 453

                                                                       
Query: 419 agggcttagaagagcctaatggtgtttttcagtttctaaagtgcctcgtgttcttatatt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 agggcttagaagagcctaatggtgtttttcagtttctaaagtgcctcgtgttcttatatt 393

                                                                       
Query: 479 taactgggcttcaaagatttaagtagaatctatcatccttgggacatcaataaaacccaa 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 taactgggcttcaaagatttaagtagaatctatcatccttgggacatcaataaaacccaa 333

                                                                       
Query: 539 agcaagccatggctgctgtaggcgctcccaggaaatccttatttaacatcgacttcgttt 598
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 332 agcaagccatggctgctgtaggcgctcccaggaaatccttatttaacattgacttcgttt 273

                                                                       
Query: 599 acagtggctctgtgctttcatttcctctgagttaaagcccacagtctcatttctgcttcc 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 acagtggctctgtgctttcatttcctctgagttaaagcccacagtctcatttctgcttcc 213

                   
Query: 659 ttccccta 666
           ||||||||
Sbjct: 212 ttccccta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1067
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1057
Effective search space:   693392
Effective search space used:   693392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)