BAC Information

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BAC

Clone NameMSMg01-235G10
Chromosome2 (Build37)
Map Location 155,569,152 - 155,717,703
singlet/doubletdoublet
Overlap geneProcr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik
Upstream geneLOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2
Downstream geneGdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235G10.T7 (MSMg01no235_g10.b1)MSMg01-235G10.TJ (MSMg01no235_g10.g1)
ACCAG400985AG400986
length723728
length of high quality
(start - end)		311 (45 - 355)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no235_g10.b1 PHD_FILE: MSMg01no235_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:43 2005CHROMAT_FILE: MSMg01no235_g10.g1 PHD_FILE: MSMg01no235_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,717,397 - 155,717,703)(155,569,152 - 155,569,431)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATTACCTCACTGTTGCTGTTGATGAATTAGCCTCCTATGACACTT
AAGCATCAAAACACTGCATCTTTTCAGGTGAGAGGCTGACAAGAACAAAT
TAATTTATTTAAAAAGTACTATTGAACCTTACCCAGTGCATTTCTGCTGT
GCAGTGTGCTCTCTATCCCGTGCCCAGCCTTTTCACGGCCTGTTTCATTA
TCATCTCCAAGTCTCATTCATATCTTAGGTACTGTCTGGGTTCAGAGGTT
AAAAGTTAGAATGAAATTGCCAATAGATCCATTTGAGGTCGATAGTGAAC
CTCTGTTTGTAAAGCTCGCCCCCCTCGCTCTGGAGAGATGGCCCTGAAGT
TAACAGCAGATACCCCTTACACAGAGGATCTGAGTTTGGTCCCCAGCATT
CAACTTGGGCTGCTCATACCTTCCTCTAACTCAGCTCCAGGGAACCCAGT
GCCTTTGATCTCCAAGGGCATTAAGTTCATATGCACATACCCAGACACAC
ACACACTTAAAAATAAATCTTAAATTAAAAAAAGCTGGATGTTCACCAGA
CATTTATTCTTTTATGAACAGATTTTGAAGTTGTCCATTCTATTACTTAA
ATCTTTACATTCTTTCCTGCTGGACAGTTTTTACTTTAAGTAAATCTTTC
GCTTTGGCCCAACCTCTGGTTTN

CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAATTCTTGCTCCTTCTTTGCTCT
TTACTTGTGACTTTCTGCGAGACTCTTCGTTCTCCTGGATGACCGTTGTC
CCGCTGAAGTGAGGCTAAAAGGCTTGACTTCCCCAGAGGAAGTGAGAACG
CAGGCCTAGCCCAAGGTGTGAATCTGAAGCATACACTAAGCATTCAAGAA
TGCCCGAAATGTGCCGGATGGAAACTCATCAGAATCTTTTTGAGGGCTGC
AGGGCGGTGACTCAGTAGGGAAAGTGTTTGCCTTTCAAACCTGAGGAGCT
GAGTTCTTATTTTATTACCCCTCCCCCCCTGCCACGGTACTGGAGAGGCA
GAAACAGGAGGATTCCTCCAAGCCAATGAGAGGCCCTGTCTCAAAGGAGG
TAGACAGGGCCTGACCAGAAGAGATGGATGACAGGTCAGTGTTTGCCAGG
CAAACCTTATGGCCTGTCTTTGATCACCATGTCTCACGGAGGAAATGCAG
AGCCAACTTGGGAAGTTGTCCTCTGCCTTCCAAATACATACTCCAGGATT
CACGTGCCTGCACAAGTATACCACACACATACACACACACACTCACATAC
ACAAACATACAAACACATGCTCACACATACAAACATGCACACACACTCAG
GAGCACACATTCACACCATCTCACACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_g10.b1 MSMg01no235_g10.b1 CHROMAT_FILE:
MSMg01no235_g10.b1 PHD_FILE: MSMg01no235_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:43 2005
         (311 letters)



>mm_chr2_155717193_155717903
          Length = 711

 Score =  594 bits (307), Expect = e-174
 Identities = 307/307 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccattacctcactgttgctgttgatgaattagcctcctatgacacttaagcatca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaattccattacctcactgttgctgttgatgaattagcctcctatgacacttaagcatca 452

                                                                       
Query: 65  aaacactgcatcttttcaggtgagaggctgacaagaacaaattaatttatttaaaaagta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aaacactgcatcttttcaggtgagaggctgacaagaacaaattaatttatttaaaaagta 392

                                                                       
Query: 125 ctattgaaccttacccagtgcatttctgctgtgcagtgtgctctctatcccgtgcccagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ctattgaaccttacccagtgcatttctgctgtgcagtgtgctctctatcccgtgcccagc 332

                                                                       
Query: 185 cttttcacggcctgtttcattatcatctccaagtctcattcatatcttaggtactgtctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cttttcacggcctgtttcattatcatctccaagtctcattcatatcttaggtactgtctg 272

                                                                       
Query: 245 ggttcagaggttaaaagttagaatgaaattgccaatagatccatttgaggtcgatagtga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ggttcagaggttaaaagttagaatgaaattgccaatagatccatttgaggtcgatagtga 212

                  
Query: 305 acctctg 311
           |||||||
Sbjct: 211 acctctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no235_g10.g1 MSMg01no235_g10.g1 CHROMAT_FILE:
MSMg01no235_g10.g1 PHD_FILE: MSMg01no235_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:43 2005
         (284 letters)



>mm_chr2_155568952_155569635
          Length = 684

 Score =  542 bits (280), Expect = e-158
 Identities = 280/280 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattcttgctccttctttgctctttacttgtgactttctgcgagactcttcgttctcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaattcttgctccttctttgctctttacttgtgactttctgcgagactcttcgttctcct 260

                                                                       
Query: 61  ggatgaccgttgtcccgctgaagtgaggctaaaaggcttgacttccccagaggaagtgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatgaccgttgtcccgctgaagtgaggctaaaaggcttgacttccccagaggaagtgag 320

                                                                       
Query: 121 aacgcaggcctagcccaaggtgtgaatctgaagcatacactaagcattcaagaatgcccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacgcaggcctagcccaaggtgtgaatctgaagcatacactaagcattcaagaatgcccg 380

                                                                       
Query: 181 aaatgtgccggatggaaactcatcagaatctttttgagggctgcagggcggtgactcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgtgccggatggaaactcatcagaatctttttgagggctgcagggcggtgactcagt 440

                                                   
Query: 241 agggaaagtgtttgcctttcaaacctgaggagctgagttc 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggaaagtgtttgcctttcaaacctgaggagctgagttc 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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