BAC Information

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BAC

Clone NameMSMg01-235M24
Chromosome2 (Build37)
Map Location 87,936,777 - 87,937,476
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164
Downstream geneOlfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235M24.T7 (MSMg01no235_m24.b1)MSMg01-235M24.TJ (MSMg01no235_m24.g1)
ACCAG401264AG401265
length743749
length of high quality
(start - end)		686 (45 - 730)673 (77 - 749)
definitionCHROMAT_FILE: MSMg01no235_m24.b1 PHD_FILE: MSMg01no235_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:14 2005CHROMAT_FILE: MSMg01no235_m24.g1 PHD_FILE: MSMg01no235_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCAATTATTCAAAGAGAAGATAATTTAACAAAACCAATTTTGCAT
GCTTTTCAAAAATGGCAATATAATGTCAATATATCTTACAGCAATTAAAG
GAAAAACTAAAAGCATCAAGTCAAAAATAAACAAAATAATTCTACTCTAC
AAGTTTGCTTTCTATTGTCAAGTCTTGGTTTTTTTTTTTTTAAGAATGAA
GTAACCATGTTTCAAATATTTGAAATGTAAATCAACTTCTCAATTACTCC
CTTTAGAAACATGTAAGAATATTTTTATCTAAGTTTTTATCCTTTTTCAT
TGAACAACCTTGTTTTCATACCTATCCCCTCCCCTGGGATTCAGTCATTC
GTGGGTGCGAGGGGGACCCCAAACCTAGAAGAAAATTGGAGGAAGGGAAG
GAGAAGCAGAGACCAAGAAGTGTTCCTATCAAGGTCTCCATTTATTATGC
TGAGGTGCCTCCTTGTATAGCATACATTGTAGGGAATAGGGAGGGGTCGA
GGGGGAAATTAACAAAGAACAAAAAAGTGGGCATCTGCTGACATGAGGGC
CAAAGTCAGGTTCCAGGCGGCAGGCACTCTGCATCTTATCTCTGGAACAT
AGATCCTCCTTGACAGCCTTGGGGTGTCAGGCCGGCCTTAGGTGTAATTC
ATATCCTTGGATGGCATGGGAGTTCAGGAAGAGATAGGGAAGA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACATTGGCATTAAATAACATTTGA
TTTATCTACATAGACATAACATTTTGCTTATTATCATGTAAGTTTCCCCA
AGTTCAGTAGCCATTATACTCTGACAAGAGAGTTCATATGTCACTGAAAG
TTCTCAAGGTTTTCATCTGTGGGTCTCAGTGTCTGTCTTAAAAGTCTTCA
GTCAGATGATGTGTCTGAACAAATTCTGCTTCAAAGCCCCAGACAGGTCC
AAGAAGATGGCTGGTCAGTTTCTGTCTGGCCTGTAGCAGCAGCACTGTCT
TTCTCCTTATTGTATTTTGTTTATTGACAAAGAAGGCCTTGCTTTGCTAT
GGTAAGCGTTCACAGAGCTAGAAGATCTAGCAACAGTAATTCTTAATGTC
CCTTCAACTGCAGGGCTGGTAAAGTTGTCTTGGAATCTACCCATACCCTT
TGTCTCATGGTGCTAGGTTCAACTGAGTTTGTATATTATTACCCTTATAT
ATATATATATGGATATTGCAATACTTGAGGCTCCAGACTCACTTCAAATA
TTCAGTGCATTTTGTATAAAGTATTTTATATTATTATCTTACTCTGAATA
AGGTCAATATTCTTTGCTGTATATAATTTTCATGGCATATAGTTTCATGG
CATATCCCAGGCTAAGGCTAACCTGTAACTTTTATTATAGCTCAAGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_m24.g1 MSMg01no235_m24.g1 CHROMAT_FILE:
MSMg01no235_m24.g1 PHD_FILE: MSMg01no235_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:14 2005
         (673 letters)



>mm_chr2_87936530_87937602
          Length = 1073

 Score = 1125 bits (582), Expect = 0.0
 Identities = 658/700 (94%), Gaps = 28/700 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   acattggcattaaataacatttgatttatctacatagacataacattttgcttattatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 acattggcattaaataacatttgatttatctacatagacataacattttgcttattatca 888

                                                                       
Query: 61  tgtaagtttccccaagttcagtagccattatactctgacaagagagttcatatgtcactg 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 887 tgtaagtttccccaagttcagtagccattatactctgtcaagagagttcatatgtcactg 828

                                                                       
Query: 121 aaagttctcaaggttttcatctgtgggtctcagtgtctgtcttaaaagtcttcagtcaga 180
           || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 827 aacgttctcaaggttttcatctgtgggtctcagtgtctgtcttaaaagtcttcactcaga 768

                                                                       
Query: 181 tgatgtgtctgaacaaattctgcttcaaagccccagacaggtccaagaagatggctggtc 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 767 tgatgtgtctgaacaaattctgcttcaaagccccaggcaggtccaagaagatggctggtc 708

                                                                       
Query: 241 agtttctgtctggcctgtagcagcagcactgtctttctccttattgtattttgtttattg 300
           ||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 707 agtttctgtctggtctgtagcagcagtactgtctttctccttattgtagtttgtttattg 648

                                                                       
Query: 301 acaaagaaggccttgctttgctatggtaagcgttcacagagctagaagatctagcaacag 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 647 acaaagaaggccttgctttgctatggtaagtgttcacagagctagaagatctagcaacag 588

                                                                       
Query: 361 taattcttaatgtcccttcaactgcagggctggtaaagttgtcttggaatctacccatac 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 587 taattcttaatgtcccttcaactgcaggactggtaaagttgtcttggaatctacccatac 528

                                                                       
Query: 421 cctttgtctcatggtgctaggttcaactgagtttgtatattatta-cc------------ 467
           ||||||||||||||||||||||||||||||||||||||||||||| ||            
Sbjct: 527 cctttgtctcatggtgctaggttcaactgagtttgtatattattatccatatatatatat 468

                                                                       
Query: 468 cttatatatatatatatg---------------gatattgcaatacttgaggctccagac 512
           |||| |||||||||||||               |||||||||||||||||||||||||||
Sbjct: 467 cttacatatatatatatgtaagatatatatatagatattgcaatacttgaggctccagac 408

                                                                       
Query: 513 tcacttcaaatattcagtgcattttgtataaagtattttatattattatcttactctgaa 572
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 407 tcacttcaaatattcagtgcattttgtataaagtattttatattattattttactctgaa 348

                                                                       
Query: 573 taaggtcaatattctttgctgtatataattttcatggcatatagtttcatggcatatccc 632
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 347 taaggtcaatattctttgctgtatataattttcatggcatatagtctcatgccatatccc 288

                                                   
Query: 633 aggctaaggctaacctgtaacttttattatagctcaagct 672
           ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 287 aggctaaggctaacctgaaacttttattatagctcaagct 248


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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