BAC Information

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BAC

Clone NameMSMg01-235O21
Chromosome2 (Build37)
Map Location 12,816,548 - 12,817,241
singlet/doubletsinglet
Overlap genenone
Upstream geneEG635919, LOC667247, Itga8, 2310047O13Rik, LOC100040837
Downstream genePter, C1ql3, Rsu1, Cubn, Trdmt1, Vim, St8sia6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235O21.T7 (MSMg01no235_o21.b1)MSMg01-235O21.TJ (MSMg01no235_o21.g1)
ACCAG401342AG401343
length744749
length of high quality
(start - end)
699 (46 - 744)665 (77 - 741)
definitionCHROMAT_FILE: MSMg01no235_o21.b1 PHD_FILE: MSMg01no235_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:21 2005CHROMAT_FILE: MSMg01no235_o21.g1 PHD_FILE: MSMg01no235_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATGCAATTATCCCTAATTTATACATGTTTACTTTTCTTTTTAAAAGATT
TATACTTTTCCAATTAAAAAACATTTTGATGCTAATTTTCATGACTGCTT
CCTATATTCTTCAGTCCCTGCCTGAGAAATTCAATATTTAGATCTTTTTG
CTAACAAATCAAAGAGAGAGAAGAGAACTTTCAAATATCCATGAAGGCAG
AAACTATTTCTGGATCCCCATGGTAATCATGATGGGAACTGTTCAAAGAG
CAAGATGTGCACCAGATCCTGATTCACTGCTGTGGTGCAAAGCGATAAGT
CAGACTGTCAGATCCAGCACATAACACTGAGTCCAAATCAAATCATTAGA
CTGAGAAAGGCACTGGTCATCTGTTTCCTGGGTGACACTGGGTGGTGGAG
CATGTGCCCAACATTTAGCCCGTTAGCCATGAGATGAGAACTAATCACAG
TTTCCTCTTCTTGGAAACGACTCAGTATTTAAGTCTAAAGGGTATTTGGT
GTTCAATCAATATCAGAACAAAGTTGAAACATTGCTGAAGAAGAATCAAG
CAAGACTCAAGTGATAGCTCAGTCAATAAAGTGCTTGCCTTGCAAGCCCA
AGGACCCAGGTTCACTCTACACGTCCCACATTTTANAAGTCAGGCATAAG
CCGGGCAGTGATGGCACGTGCCTTTAATCCCATCACTTGGTGGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGATGTATACCGAATGGCT
GAGAAGCACCTAAAAAAAGTTCAACATTCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACAACAGTCAGAATGGCTAAGAT
CAAAAACTCAGGTAACAGCAGATGCTGGCGAGGATGTGGAGAAATAGAAA
CACTCCTCTATTGTTGGTGGGAATGCAAGCTGGTACAACCACTCTGGAAA
TCAGTTTGGTGGTTCCTCAGAAAATTGGACATACTTCTACCAGAAGATCC
AGCAATACCACTCCTGGGCATATACTCAGACAATGCTCCAATATGTAATA
AGAACACATGCTCCACTATATTCATAGCAGCCTTATTTATAATAGTCAGA
AGCTGGAAAGAACCCAGATGTCCCTCAATAGAAGAATGGATAAAAAAATG
TGGTACAATTACACAATGGAGTACTACATAGCTATTAAAAACAATGAATT
TATGCCGTTCTTATACAAATGGATGGACCTGGATGATATCTTTCTGAGTG
ACGTAACCCAATTAGAAAAGAACACAGATGGTATGCACTCACTGATAAGT
GGATATTAATTAGCCCAGAAGCTCAGAATCCTTCTCAGAAGGGGGAACAA
AATACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCAGAGATGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_o21.b1 MSMg01no235_o21.b1 CHROMAT_FILE:
MSMg01no235_o21.b1 PHD_FILE: MSMg01no235_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:21 2005
         (699 letters)



>mm_chr2_12816343_12817441
          Length = 1099

 Score = 1315 bits (680), Expect = 0.0
 Identities = 691/695 (99%), Gaps = 2/695 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   aatgcaattatccctaatttatacatgtttacttttctttttaaaagatttatacttttc 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aatgcaattatccctaatttatacatgtttacttttctttttaaaagatttatacttttc 265

                                                                       
Query: 66  caatt-aaaaaacattttgatgctaattttcatgactgcttcctatattcttcagtccct 124
           ||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 266 caatttaaaaaa-attttgatgctaattttcatgactgcttcctatattctttagtccct 324

                                                                       
Query: 125 gcctgagaaattcaatatttagatctttttgctaacaaatcaaagagagagaagagaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcctgagaaattcaatatttagatctttttgctaacaaatcaaagagagagaagagaact 384

                                                                       
Query: 185 ttcaaatatccatgaaggcagaaactatttctggatccccatggtaatcatgatgggaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcaaatatccatgaaggcagaaactatttctggatccccatggtaatcatgatgggaac 444

                                                                       
Query: 245 tgttcaaagagcaagatgtgcaccagatcctgattcactgctgtggtgcaaagcgataag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgttcaaagagcaagatgtgcaccagatcctgattcactgctgtggtgcaaagcgataag 504

                                                                       
Query: 305 tcagactgtcagatccagcacataacactgagtccaaatcaaatcattagactgagaaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcagactgtcagatccagcacataacactgagtccaaatcaaatcattagactgagaaag 564

                                                                       
Query: 365 gcactggtcatctgtttcctgggtgacactgggtggtggagcatgtgcccaacatttagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcactggtcatctgtttcctgggtgacactgggtggtggagcatgtgcccaacatttagc 624

                                                                       
Query: 425 ccgttagccatgagatgagaactaatcacagtttcctcttcttggaaacgactcagtatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccgttagccatgagatgagaactaatcacagtttcctcttcttggaaacgactcagtatt 684

                                                                       
Query: 485 taagtctaaagggtatttggtgttcaatcaatatcagaacaaagttgaaacattgctgaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taagtctaaagggtatttggtgttcaatcaatatcagaacaaagttgaaacattgctgaa 744

                                                                       
Query: 545 gaagaatcaagcaagactcaagtgatagctcagtcaataaagtgcttgccttgcaagccc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaagaatcaagcaagactcaagtgatagctcagtcaataaagtgcttgccttgcaagccc 804

                                                                       
Query: 605 aaggacccaggttcactctacacgtcccacattttanaagtcaggcataagccgggcagt 664
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 805 aaggacccaggttcactctacacgtcccacattttaaaagtcaggcataagccgggcagt 864

                                              
Query: 665 gatggcacgtgcctttaatcccatcacttggtgga 699
           |||||||||||||||||||||||||||||||||||
Sbjct: 865 gatggcacgtgcctttaatcccatcacttggtgga 899


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space:   750321
Effective search space used:   750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)