BAC Information

Click to search

BAC

Clone NameMSMg01-236M04
Chromosome2 (Build37)
Map Location 155,199,626 - 155,252,485
singlet/doubletdoublet
Overlap geneTrp53inp2, Ncoa6
Upstream geneSnta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1
Downstream geneLOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236M04.T7 (MSMg01no236_m04.b1)MSMg01-236M04.TJ (MSMg01no236_m04.g1)
ACCAG401921AG401922
length727729
length of high quality
(start - end)		681 (47 - 727)653 (77 - 729)
definitionCHROMAT_FILE: MSMg01no236_m04.b1 PHD_FILE: MSMg01no236_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:24 2005CHROMAT_FILE: MSMg01no236_m04.g1 PHD_FILE: MSMg01no236_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,252,167 - 155,252,485)(155,199,626 - 155,200,278)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAGCCAGTCCACGCTACATAGATCACCTGCCTTCCCTAAGCCC
CAAAGACCATGTATACAAACTATGTAATCCTAATTCCAGAGGTTTGCTTT
GTTTGTTTGTTTTGCTTTTTTTTTTCGAGACAGAGTTTCTCTGTATAGCG
CTGGCTGTCCTGGAACTCATTTTATAGACCAGGCTGGCCTCAAACTCAAA
ATTTGCCTGCCTCTGCCTCCTGAGTGCTGGGACTAAAGGTGTGCGCTACC
ACACCCGGCTCAATTCCAGAGTTCTTAATCTTTTCAAGCATAAATGGAAT
ATTTGTATGAGTTGACCATGTTTTTTTTTAAGTTTTTAAAAAAGAATTAT
TTATTTATTTTATGTACTTGAGTACACTGTTGCTGTCTTCAGACACACCA
GAAGAGAGGGTATCAGATTCCATTTCAGATGGTTGTGAGCTACCATGTGT
TTGCTAGGACTCAGCACCTCTGGAAGAACAGTCAGTGCTCTGACTCTGAG
CCATCTCTCTAGCCCAAGTTGGCCATGTTTTCAAAAGCAAGGTTTTTTTT
TTTTTATTAGATATTTTCTTTATTTACATTTCAAATGCTATCCCAAAAGT
TCCCTATACCCTCCCCCCGCCCTGCTCTCCTACCCACCAACTCCCACTTC
TTGGCCCTGGTGTTCCCCTGTACTGGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACAGGCACCAGGCACACACATGG
TGCACAGATATTCAAGCAAAACACTCATAGACATAAGTAAAAGTAATAAA
GTCTCACAGGTTAAAGCCAGCCTCTATGAATATAAATTAGACTTAGTTCC
TCTAGTGGGAAGAGATGACACAATTAATAGAACCAGACAAGCTGGCAGAC
AATAAGCAAGGTCCAAGATCGACCAGTCAATATTTGCACAGTATTCAGAA
CCTGCCTCCCTGGCTTTTTCCCTCCAAAGCTCCTGGTGGAAGCCTTTTAG
ATGGAATCAAGAGAATCAGACCAGGAGGGCTGTATGGGGTAGGAGAGGTT
CTGAGAACCTCAGAAAGCAGACTGTGGGAAATGGTTCAAGCTGGGCTTGA
ATAGAAAGGTAACTGCAAACAAGGGGAGGGGATATGGTGAGATGGACCTA
GAAAACAGAATCAAGTCTCACAGTGGACCTTGAAAACAGAATCGAGCCTT
GCAAAGATACCGCTGAACACTTACTCAATGCAAATGCCTGTAATGCCACA
CTCAGAATGGTTAGGCAGGAGGATTGCCATGAGTTCAAGGCCAGCCTCAA
AGTAGATCAAGTTAACAGGGACAGATGTGATGAATACCTTTAATGCCTAA
AGGCAGAGGCAGAGGCAGAGGCAGAGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_m04.b1 MSMg01no236_m04.b1 CHROMAT_FILE:
MSMg01no236_m04.b1 PHD_FILE: MSMg01no236_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:24 2005
         (681 letters)



>mm_chr2_155252167_155253247
          Length = 1081

 Score =  609 bits (315), Expect = e-178
 Identities = 318/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagccagtccacgctacatagatcacctgccttccctaagccccaaagaccat 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gaattccaagccagtcaacgctacatagatcacctgccttccctaagccccaaagaccat 260

                                                                       
Query: 65  gtatacaaactatgtaatcctaattccagaggtttgctttgtttgtttgttttgcttttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtatacaaactatgtaatcctaattccagaggtttgctttgtttgtttgttttgcttttt 200

                                                                       
Query: 125 tttttcgagacagagtttctctgtatagcgctggctgtcctggaactcattttatagacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tttttcgagacagagtttctctgtatagcgctggctgtcctggaactcattttatagacc 140

                                                                       
Query: 185 aggctggcctcaaactcaaaatttgcctgcctctgcctcctgagtgctgggactaaaggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 aggctggcctcaaactcaaaatttgcctgcctctgcctcctgagtgctgggactaaaggt 80

                                                                       
Query: 245 gtgcgctaccacacccggctcaattccagagttcttaatcttttcaagcataaatggaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  gtgcgctaccacacccggctcaattccagagttcttaatcttttcaagcataaatggaat 20

                              
Query: 305 atttgtatgagttgaccat 323
           |||||||||||||||||||
Sbjct: 19  atttgtatgagttgaccat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no236_m04.g1 MSMg01no236_m04.g1 CHROMAT_FILE:
MSMg01no236_m04.g1 PHD_FILE: MSMg01no236_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:24 2005
         (653 letters)



>mm_chr2_155199426_155200478
          Length = 1053

 Score = 1263 bits (653), Expect = 0.0
 Identities = 653/653 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaggcaccaggcacacacatggtgcacagatattcaagcaaaacactcatagacataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacaggcaccaggcacacacatggtgcacagatattcaagcaaaacactcatagacataa 260

                                                                       
Query: 61  gtaaaagtaataaagtctcacaggttaaagccagcctctatgaatataaattagacttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaaagtaataaagtctcacaggttaaagccagcctctatgaatataaattagacttag 320

                                                                       
Query: 121 ttcctctagtgggaagagatgacacaattaatagaaccagacaagctggcagacaataag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcctctagtgggaagagatgacacaattaatagaaccagacaagctggcagacaataag 380

                                                                       
Query: 181 caaggtccaagatcgaccagtcaatatttgcacagtattcagaacctgcctccctggctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaggtccaagatcgaccagtcaatatttgcacagtattcagaacctgcctccctggctt 440

                                                                       
Query: 241 tttccctccaaagctcctggtggaagccttttagatggaatcaagagaatcagaccagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttccctccaaagctcctggtggaagccttttagatggaatcaagagaatcagaccagga 500

                                                                       
Query: 301 gggctgtatggggtaggagaggttctgagaacctcagaaagcagactgtgggaaatggtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggctgtatggggtaggagaggttctgagaacctcagaaagcagactgtgggaaatggtt 560

                                                                       
Query: 361 caagctgggcttgaatagaaaggtaactgcaaacaaggggaggggatatggtgagatgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caagctgggcttgaatagaaaggtaactgcaaacaaggggaggggatatggtgagatgga 620

                                                                       
Query: 421 cctagaaaacagaatcaagtctcacagtggaccttgaaaacagaatcgagccttgcaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctagaaaacagaatcaagtctcacagtggaccttgaaaacagaatcgagccttgcaaag 680

                                                                       
Query: 481 ataccgctgaacacttactcaatgcaaatgcctgtaatgccacactcagaatggttaggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataccgctgaacacttactcaatgcaaatgcctgtaatgccacactcagaatggttaggc 740

                                                                       
Query: 541 aggaggattgccatgagttcaaggccagcctcaaagtagatcaagttaacagggacagat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggaggattgccatgagttcaaggccagcctcaaagtagatcaagttaacagggacagat 800

                                                                
Query: 601 gtgatgaatacctttaatgcctaaaggcagaggcagaggcagaggcagaggca 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtgatgaatacctttaatgcctaaaggcagaggcagaggcagaggcagaggca 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |