BAC Information

Click to search

BAC

Clone NameMSMg01-236P10
Chromosome2 (Build37)
Map Location 70,829,327 - 70,829,612
singlet/doubletsinglet
Overlap geneMettl8
Upstream geneMyo3b, LOC100040021, Sp5, 4933404M02Rik, LOC100040068, Gad1, LOC100039766, Gorasp2, Tlk1
Downstream gene4833418A01Rik, Cybrd1, Dync1i2, Slc25a12, LOC667528, Hat1, LOC100040177, Metapl1, LOC100040207, Dlx1, Dlx1as, Dlx2, Gm1631, Itga6, Pdk1, Rapgef4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236P10.T7 (MSMg01no236_p10.b1)MSMg01-236P10.TJ (MSMg01no236_p10.g1)
ACCAG402063AG402064
length711784
length of high quality
(start - end)
249 (52 - 300)286 (127 - 412)
definitionCHROMAT_FILE: MSMg01no236_p10.b1 PHD_FILE: MSMg01no236_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:39 2005CHROMAT_FILE: MSMg01no236_p10.g1 PHD_FILE: MSMg01no236_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTATTTCGAGAGGATCCGCGGAATTCTTATTTCTTCCCAAAAGA
TGTCGGAGTAACATGTTAATTTCCTCAGGTTAGAAAATCTACTATGGCCC
CGCAGTGGTGGCGCACACCTTTAATCCCTGTACTAGGGAGGCAGAGGCAG
GCAGATTTCTGAGTTTGAGGTCAGCCTGGTCTACAGAGTGAGTTCCAGGA
CAGTCAGGGTTACACAAAGAAACCCTGTGTAGAAGAAAAGGAAAAGAAAA
AAAGAAAAGAAAAGGAAAGAAAAGAAAAGGAAAATTTACTATGTATCCAC
ATTTCATAAATATATTGTGTAAGATGGACACGAGTAATTTTAATGTTGCC
TTTTTATTTGAAAGGTATTTATATGTGACATTAGCATTCGAAGTGGATGG
TGGGTTACATCACCTGTTGAAACACAAACAGAAATAATGATTTCGTTTTT
CTGGCCTATTTTTTTTAAAGCTATGCTTCTCAAGAAACAACACAATTATG
CTTCAGATTTCCAAAAATGGTCTCCCACGACCGTAAACAGATGATGGACA
GGAATTTCGGCTTTGCTCACTCTGGGGATCCGTGGTATGGCACCAGTCTC
AACTGTTAAACTATGGCGAGGTGCCACGATTGATGTTGGCATCCTAGCAT
TCATGAGCCTGGTCTGGAGAGTCCCTTGAGCAAATGAACTTATGACCAGC
CTGGGCCAATG
CCCCTATTTTCTTTTTCCTTTCTTATTTTACTTCCTTCCCTNNNCCCCCC
ACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACTCCTCTGAACTCACAGAAGAG
GTATGACAGCTGGATGTCATCCCACCACCAGAGAGGCAGAGAATGGAGAG
CCCAGCGGCAAACTTGCTAGCTGGACTAGTCATAATAATCCCAGCGGTGA
GGAGGCAGGGTAGGTGGGTCCTGAGACTCCCTGGCAGCCAGCCCAGCCTC
CTTGATGTGGCCTAGGCCAGTGAAAAACCCTGCCTGACCCCCTCCCCACA
AAAGGTGACTAGTAACTAAGGAATATTACTCCAGGTTGACCCCTGCTCTC
CACATGCATATGTTTTTTTGTGCACTCCCCCCCACATGAACATACCTACA
CTCACACACTTACCTTACGGAGAGAGCACAGATGTCCTAAAGTAGAAGGT
CATTTTAAAGAAAATAAGGTAGAAAATGGTATACAGTGAGGACCGCTGTT
AGGCAAAGTGACTAGGAGTCACTCACTGTGAAGGACACTGACCACTTCTA
AACATTTTTTTTTTCTGTGTGACATTTTTAAAATTGTGGTAAATGCACAT
ATAATGGAGCATCTTAGTCATTCTTAAGTGCATGCTCCCACGGCGTTAGG
TTTGTTTCCGCTGTTGTGAAGCAAATTTTTGGACTCTCTATAATGAAAAC
TCTAACTCGTAATTTACTAAATAACTCCCACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_p10.g1 MSMg01no236_p10.g1 CHROMAT_FILE:
MSMg01no236_p10.g1 PHD_FILE: MSMg01no236_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:40 2005
         (286 letters)



>mm_chr2_70829127_70829812
          Length = 686

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactcctctgaactcacagaagaggtatgacagctggatgtcatcccaccaccagagagg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aactcctctgaactcacagaagaggtatgacagctggatgtcatcccagcaccagagagg 260

                                                                       
Query: 61  cagagaatggagagcccagcggcaaacttgctagctggactagtcataataatcccagcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagagaatggagagcccagcggcaaacttgctagctggactagtcataataatcccagcg 320

                                                                       
Query: 121 gtgaggaggcagggtaggtgggtcctgagactccctggcagccagcccagcctccttgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgaggaggcagggtaggtgggtcctgagactccctggcagccagcccagcctccttgat 380

                                                                       
Query: 181 gtggcctaggccagtgaaaaaccctgcctgaccccctccccacaaaaggtgactagtaac 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggcctaggccagtgaaaaaccctgcctgaccccctccccacaaaaggtgactagtaac 440

                                                         
Query: 241 taaggaatattactccaggttgacccctgctctccacatgcatatg 286
           |||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 441 taaggaatagcactccaggttgacccctgctctccacatgcatatg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)