CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCGAGCCGAGCCGACGTGGGAGACCACTGATTTGGGTCAAAGAATAA
AAATGATTTCACTGTTCTTTGTAATCTTTGATCGGGAAAGCGACTTTATT
TTTTAGAAACTGTATGTTTAAGAGCAACCGTACTGCCTCGGAAGATGTAT
TCTTGGCGGCGAACAAAGCAATCCATTTCCTCTCTCTGTTTCCCTTTTGT
GTGCTGCAGATGTTGGCAGTAGTAGCAGCGTTATAAACATAGGCAGCGGG
AGAGCCTGCGACTAGAACTGAGGAAATCGGTTCAGGTTAAATTCTCTTGA
ATACTTCCTCTCTAAGACCTTGTGCCAGTTCGTGATTTCCAGGCAGATGT
TTTCCATTACACTGCTACTGGGTCATGACAGACACTGCCTCAGTTTGCAG
TTGCTGTGGCAACCACGGTTTTCGGTCTTCAGAGAATAGTATACAGCTCA
GAGGTACGCTTTTTCTTCCAGGAATGGAAATGTTGATCAGCTGGAGGAAT
TGATTAGGTTGACAACTGTACATTTGATCAATCGGTAATGAATTTGAAAG
ATCCCGTTTACCACGCTCTTTTTGCTTAGTGGGCGGTCACGCGTTTCTTC
TGTTAATTTTTAGACAAATAAAGATCCGATACTTTAAAACACCATGTGTT
TTGCAAACTCTGTTTTTCATGTGGATGAGAA

CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCTGCTACGTTTACTCCAT
GACAGCGAGAATTTCCTGGGTCCTGATGACTCTTAATGGCCAGTCGAGGG
ATAGAAGAAAGGAAGGAAGGAAGGAAGGGAGGGAGGGAGGGAGGGGGTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTNTTTTTTTTTTTTTTTTNNTNNTTCTNNNTTTTTTTTTTTT
TNTNNNTTTNCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTCC
NTNNTTNTTTTTTTTTTTTTCCCCCCCCCCCCCCCCTTTNNNTTTTTTTT
TTTTTTTTCTTTTTTTTGGCCCCCCCCCCCAAAAAAAAAAAAAATTTCCT
CCTCGGGGGGGGTGCCTCTCCTTTTTTTCCCTTTCCTCTATTTCCTTCTC
TTCCTTTTTCCTTTATCTTCCCTCTTTTTTCTTTTCTTCTCTCTTCTTTT
TCCTTTTTCTTCCCTCTTTTCCCCCTTCTTATTCTTTCCTTCTTTATTTT
TTCTCTTTTTCTCTTTTTTTTTTTCCTCCTTTTTCCTCTTTTTTCTCCTC
TTTCTCTCTTTTCTTTCTCTTTATGCTTTTCTTTCTTTTCTTTCCCCCAC
CTTTTTTCTTTTCTCTTTTTTTCTCTCTATTTCTTCCTTTCTTCTTCCTT
CTCCCCTTTTCCTTTTTTCCCTTTTTCTTTCCTTTCTCCCCCCCTTTTTC
TCCTCCCTTN

Query= MSMg01no237_c08.b1 MSMg01no237_c08.b1 CHROMAT_FILE:
MSMg01no237_c08.b1 PHD_FILE: MSMg01no237_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:53 2005
         (685 letters)



>mm_chr2_65656142_65657226
          Length = 1085

 Score = 1274 bits (659), Expect = 0.0
 Identities = 677/683 (99%), Gaps = 2/683 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccgagccgagccgacgtgggagaccactgatttgggtcaaagaataaaaatgat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccgagccgagccgacgtgggagaccactgatttgggtcaaagaataaaaatgat 263

                                                                       
Query: 64  ttcactgttctttgtaatctttgatcgggaaagcgactttattttttagaaactgtatgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttcactgttctttgtaatctttgatcgggaaagcgactttattttttagaaactgtatgt 323

                                                                       
Query: 124 ttaagagcaaccgtactgcctcggaagatgtattcttggcggcgaacaaagcaatccatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaagagcaaccgtactgcctcggaagatgtattcttggcggcgaacaaagcaatccatt 383

                                                                       
Query: 184 tcctctctctgtttcccttttgtgtgctgcagatgttggcagtagtagcagcgttataaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcctctctctgtttcccttttgtgtgctgcagatgttggcagtagtagcagcgttataaa 443

                                                                       
Query: 244 cataggcagcgggagagcctgcgactagaactgaggaaatcggttcaggttaaattctct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cataggcagcgggagagcctgcgactagaactgaggaaatcggttcaggttaaattctct 503

                                                                       
Query: 304 tgaatacttcctctctaagaccttgtgccagttcgtgatttccaggcagatgttttccat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgaatacttcctctctaagaccttgtgccagttcgtgatttccaggcagatgttttccat 563

                                                                       
Query: 364 tacactgctactgggtcatgacagacactgcctcagtttgcagttgctgtggcaaccacg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tacactgctactgggtcatgacagacactgcctcagtttgcagttgctgtggcaaccacg 623

                                                                       
Query: 424 gttttcggtcttcagagaatagtatacagctcagaggtacgctttttcttccaggaatgg 483
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 624 gttttcggtcttcagagaatagtatacagctcagaggcacgctttttcttccaggaatgg 683

                                                                       
Query: 484 aaatgttgatcagctggaggaattgattaggttgacaactgtacatttgatcaatcggta 543
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 684 aaatgttgatcagctggaggaattgattgggttgacaactgtacatttgatcaatcggta 743

                                                                       
Query: 544 atgaa-tttgaaagatcccgtttaccacgctctttttgcttagtgggcggtcacgcgttt 602
            | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gt-aagtttgaaagatcccgtttaccacgctctttttgcttagtgggcggtcacgcgttt 802

                                                                       
Query: 603 cttctgttaatttttagacaaataaagatccgatactttaaaacaccatgtgttttgcaa 662
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 803 cttctgttaatttttagacaaataaagatctgatactttaaaacaccatgtgttttgcaa 862

                                  
Query: 663 actctgtttttcatgtggatgag 685
           |||||||||||||||||||||||
Sbjct: 863 actctgtttttcatgtggatgag 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)