BAC Information

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BAC

Clone NameMSMg01-237C20
Chromosome2 (Build37)
Map Location 90,097,782 - 90,098,102
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142
Downstream geneOlfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237C20.T7 (MSMg01no237_c20.b1)MSMg01-237C20.TJ (MSMg01no237_c20.g1)
ACCAG402204AG402205
length750758
length of high quality
(start - end)
321 (430 - 750)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no237_c20.b1 PHD_FILE: MSMg01no237_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:55 2005CHROMAT_FILE: MSMg01no237_c20.g1 PHD_FILE: MSMg01no237_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:56 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAA
TAACTCACATGTTTTCACAAAAGAAAATGATGTTAAGCCTATAAGATATT
AAAAATAAACTTTATTCCAAATGCTTATCGTCTTAACTTGAAGAATGAAA
GACAAGTTGATTCTCACTAACCATCTAAGAATGCACTTAAAGCCTATGTA
ACTTCCTGCCTCAGTGATCACCTGATTAGCAGGAGGACTACATGGAGCTA
GGGATTTTTCTGGATTGTTTGTTGAATGAATGAGTGGATGGATATTATGC
TTGAGGCAATTCTTGCATATTCAGTGGCTATGACCACTATCATCATAAAG
AGGTTTATTCTCCCACCCCCCCACCCATTTTAAAAATAAGCATTATACAC
AAATATGCAAATGTGAGACTGAGAAAAAGAAGTGAAGACAATGTAGATTA
ACAGTACAGTTTTCTGTGAATGTGGCAACAGGAGAACTGGAAGTTGGTAG
GCAATAGACTGTCTTCGGTTGAATATTTAATCAGTAGCTTATCAAAATCT
AGTGCCTAGGGACTTTCTTTTCCTTAAAAAAATTAAGATACTTCATTAGG
TCAGAAACTCTGTAAAGCAATATTGTAGTGTCACTAAAATAATTGCAAAA
TATTTGTAAATATTGCCCAAGTCATTACTTATTCGGCTAAGTTTTCCTAT
AGGGAAAAGAAATTCCAGGGGGAAGATAGACTCTTGATTATATGCGTGAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTT
TTTAATGGGGTTATTTGATTTTCTCAAGTCCACCTTCTTGAGTTCTTTAT
ATGTGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTT
TCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGATGGTGTCTTTTGCCTT
GCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTCA
CAGCACAAGCCATTGCTGTTCTGTTCTTGAATTTTTCCCCTGTGCCCATA
TCTTCAAGGCTTTTTCTTTCTTTCTCCTCTATAAGTTTCATTGTCTCTGG
TTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAG
ATAAGTATGGATCGATTCGCATTCTTCTACACGATAACAACCAGTTGTGT
CAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGC
TCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTATGGAT
GGTCCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAACT
CACACAATATGTACTCTCTGATAAGTGGATATTAGCCCCCAACCTAGGAT
ACCCAAGATATAAGATATAATTTGCTAAACACCTGACACTCAAGAATATC
GACGACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_c20.b1 MSMg01no237_c20.b1 CHROMAT_FILE:
MSMg01no237_c20.b1 PHD_FILE: MSMg01no237_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:55 2005
         (321 letters)



>mm_chr2_90097582_90098302
          Length = 721

 Score =  592 bits (306), Expect = e-173
 Identities = 318/322 (98%), Gaps = 2/322 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtgaagacaatgtagattaacagtacagttttctgtgaatgtggcaacaggagaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aagtgaagacaatgtagattaacagtacagttttctgtgaatgtggcaacaggagaactg 462

                                                                       
Query: 61  gaagttggtaggcaat-agactgtcttcggttgaatatttaatcagtagcttatcaaaat 119
           ||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gaagttggtaggcgataag-ctgtcttcggttgaatatttaatcagtagcttatcaaaat 403

                                                                       
Query: 120 ctagtgcctagggactttcttttccttaaaaaaattaagatacttcattaggtcagaaac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ctagtgcctagggactttcttttccttaaaaaaattaagatacttcattaggtcagaaac 343

                                                                       
Query: 180 tctgtaaagcaatattgtagtgtcactaaaataattgcaaaatatttgtaaatattgccc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tctgtaaagcaatattgtagtgtcactaaaataattgcaaaatatttgtaaatattgccc 283

                                                                       
Query: 240 aagtcattacttattcggctaagttttcctatagggaaaagaaattccagggggaagata 299
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 282 aagtcattacttattcggctaaattttcctatagggaaaagaaattccagggggaagata 223

                                 
Query: 300 gactcttgattatatgcgtgaa 321
           ||||||||||||||||||||||
Sbjct: 222 gactcttgattatatgcgtgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)