Query= MSMg01no237_j07.b1 MSMg01no237_j07.b1 CHROMAT_FILE:
MSMg01no237_j07.b1 PHD_FILE: MSMg01no237_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:26 2005
(400 letters)
>mm_chr2_37232598_37233397
Length = 800
Score = 745 bits (385), Expect = 0.0
Identities = 398/405 (98%), Gaps = 5/405 (1%)
Strand = Plus / Plus
Query: 1 gagagaagaaaacataagcttagctttcaattattattttacgttttaaaaatcaaagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagagaagaaaacataagcttagctttcaattattattttacgttttaaaaatcaaagct 260
Query: 61 aaatatatagagcctacctgctgaagttcaatgctcaaaaggtctccggtactagaatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatatatagagcctacctgctgaagttcaatgctcaaaaggtctccggtactagaatgc 320
Query: 121 tttctatgaccagataaatcagtaacaatgaatctgtccctttaaaaagaattatattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctatgaccagataaatcagtaacaatgaatctgtccctttaaaaagaattatattta 380
Query: 181 ctgtagttaaagtgagacataaaggagccaaagcaataatgactctatgttctttgtaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtagttaaagtgagacataaaggagccaaagcaataatgactctatgttctttgtaac 440
Query: 241 gatcactgaatgtgttttagtcactattccaaatgtaaaatttgttccagaaagcttttt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 gatcactgaatgtgttttagtcactattccaaatgtaaaatttgttccagaaagtttttt 500
Query: 301 ttttttttttttttt-----gagacagggtttctctgtgtagtcctggctgtcctggaac 355
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 ttttttttttttttttttttgagacagggtttctctgtgtagccctggctgtcctggaac 560
Query: 356 tcactctgtagaccaggctggcctcgaactcagaaatccgcctgc 400
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcactctgtagaccaggctggcctcgaactcagaaatccgcctgc 605
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space: 309281
Effective search space used: 309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_j07.g1 MSMg01no237_j07.g1 CHROMAT_FILE:
MSMg01no237_j07.g1 PHD_FILE: MSMg01no237_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:26 2005
(554 letters)
>mm_chr2_37364060_37365014
Length = 955
Score = 984 bits (509), Expect = 0.0
Identities = 518/521 (99%), Gaps = 1/521 (0%)
Strand = Plus / Minus
Query: 1 gtacttttctactaagtgatcgttgttgtggcagcctgctagcagctgccagacttctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gtacttttctactaagtgatcgttgttgtggcagcctgctagcagctgccagacttctcc 462
Query: 61 acgaagagcttcaggaacaccacttctcactaaggatgacaactgcttcggtctcacact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 acgaagagcttcaggaacaccacttctcactaaggatgacaactgcttcggtctcacact 402
Query: 121 caagttgagatgcctaaaaataaagccataattcattactttggccagggaagaggctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 caagttgagatgcctaaaaataaagccataattcattactttggccagggaagaggctct 342
Query: 181 gaaagattctttactgaaaataaaatggtgtacaaagaaataagaaggtaacagagttat 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gaaagatcctttactgaaaataaaatggtgtacaaagaaataagaaggtaacagagttat 282
Query: 241 aat-aaaaaatgaatcattaacatggcacctataaaccactgtgtctaagtatcattaaa 299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aataaaaaaatgaatcattaacatggcacctataaaccactgtgtctaagtatcattaaa 222
Query: 300 tcattatctaaaaaagatctggaagctaggaagtggtggtgcatgctattaatcctagca 359
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tcattatctaaaaaagatctgaaagctaggaagtggtggtgcatgctattaatcctagca 162
Query: 360 cttgggaggcagaggcagataaatctctgagtttgaggccagcctggtctacagagtgag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 cttgggaggcagaggcagataaatctctgagtttgaggccagcctggtctacagagtgag 102
Query: 420 ttccaagacagccagggctactcacagagcaaccttattgtaataaaaaccaagcaatca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 ttccaagacagccagggctactcacagagcaaccttattgtaataaaaaccaagcaatca 42
Query: 480 accaaacaaccaaaaagtaactggaaactacagggttgttt 520
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 accaaacaaccaaaaagtaactggaaactacagggttgttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 955
Length adjustment: 10
Effective length of query: 544
Effective length of database: 945
Effective search space: 514080
Effective search space used: 514080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
