BAC Information

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BAC

Clone NameMSMg01-237J16
Chromosome2 (Build37)
Map Location 129,244,003 - 129,244,246
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896
Downstream geneF830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237J16.T7 (MSMg01no237_j16.b1)MSMg01-237J16.TJ (MSMg01no237_j16.g1)
ACCAG402507AG402508
length788769
length of high quality
(start - end)
74 (497 - 570)449 (100 - 548)
definitionCHROMAT_FILE: MSMg01no237_j16.b1 PHD_FILE: MSMg01no237_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:28 2005CHROMAT_FILE: MSMg01no237_j16.g1 PHD_FILE: MSMg01no237_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCACCCTCCTCTTCCCTTTCATCTNTCCCCCCCCCCCCCNNNTTCCC
TATGATATGGTAGGCCTGGNGGCCGCCTGGTACCCGACCCGGGGGNGNAA
NNANNAGATTTTCCAACAAAAGGCAANNCNNAAGNGGAAGNANNNNNAGG
GAGGNCNCCAGNGAGAAATTTNCCCCAGGGCAAGGGNNAGAAAGGGCCAG
CCNGGGGCAAAGCNNGGGGNNNAAGGCANNCAGGCAAACGGCAGAGCNAG
GGNNCAAGGACCCAGAACGGGAGCGNGGAAAGGGGCGAGAAAACGGGCAA
AGGGAGGACTTTCATTAGCAAGACACANGGCNCCAGAAGAGACGGCAACA
AGAACAAAAAAAAAGCAGGGGAGCCAGAGAATTTTTTTTTTGNGGGCAGA
GGCGCCCTGGGCCAAGAGGAGGTGTTTTTTTTGCACCCCCCCCCGCTTTC
AGTGAAGGTGGATGCCCACAGATCCTCTCTAATCCCTGCGGAGACTTCTC
CAGGGTCTAAGCTTCTTTTTTTCTGGAGGAGGAAACTGAAGAGGCACCAG
ATTAGCTTTGAACCCTGCAGGCTGCTCCAGAGGGTGTCACCTTTAATCAC
TAGGCTGCTTTTCAGGGAAAAGGCTCAAGGGCTCAGACCACATTCAAAGT
TTGTCTCCATCACTTTCTACCTGTGCAAACCCAAGCACCAGCGCGCCCCA
AGTTTGTTTTTTTGTTAAATGCCGCTCCAAGTGGCTTCCTCATGGGCCCC
GCCCCATAAGTGCTCCAATGCGTCCTTCCCCCACCCTG
TTTTTTTTTTTCCCCTTTTTCCTCCATCCTTTCTCCCCTTTATACCCGGA
AACCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCAGAGTTTGCACAAGCTTCATCCTGGTTCAGCTCTCCCAT
TGCTTTCACAACTAGAGAACCAGAACCAAGCCTAGCACTGCTCTCTCTAG
GCAGTGCTGAGCTCCAGTGGGATGCTGTTACTATTGTTACAGTCACTGAA
TGCTGTTACTATTGTTACAGTCACTGAATGCTGTTACTATTGTTACAGTC
ACTGAATGCTGTTACTATTGTTACAGTCACTGAATGCTGTTACTATTGTT
ACAGTTACTGTGCAACTGCTATAATTGTGGTTGATGCACATCTAACAGGA
TCCCTTTAGCTTCCCCCAGCTGAAGCAGCATCTCAGTTGATGCTCCTCAC
TGAACTCTCGCCATGGCTTGTTTTGTTGGGCCCAAGATGCATTTTTGTTT
TAAATTTTTTTTAATGAAAAATTCAGCTTGTAGTCTAATATGATTGAAGC
TCATCCTGAGTTTGTTTTATAATGCATTGAACTGGAAAGTCTATGAGTGG
TGAATTATTCAAGATACGTGGACCAACGAGGGATCTGGGCTCTCATGTGA
GGAGGGGTGATCTAAGAAATAAGCAAAATTCTGTGTGTCCCTGTTATCCC
TTTTTATCTACCTTTTATAAACTTCAACCTTCACCTTGGGCAGAGTCCTC
ACTTCATTTATTAATGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_j16.g1 MSMg01no237_j16.g1 CHROMAT_FILE:
MSMg01no237_j16.g1 PHD_FILE: MSMg01no237_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:28 2005
         (449 letters)



>mm_chr2_129243681_129244529
          Length = 849

 Score =  443 bits (229), Expect = e-128
 Identities = 241/245 (98%), Gaps = 3/245 (1%)
 Strand = Plus / Plus

                                                                       
Query: 207 atgctgttactattgttacagtcactgaatgctgttactattgttacagttactgtgcaa 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atgctgttactattgttacagtcactgaatgctgttactattgttacagttactgtgcaa 382

                                                                       
Query: 267 ctgctata-attgtggttgatgcacatctaacaggatccctttagcttcccccagctgaa 325
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctgcta-agattgtggttgatgcacatctaacaggatccctttagcttcccccagctgaa 441

                                                                       
Query: 326 gcagcatctcagttgatgctcctcactgaactctcgccatggcttgttttgttgggccca 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gcagcatctcagttgatgctcctcactgaactctcgccatggcttgttttgttgggccca 501

                                                                       
Query: 386 agatgcatttttgttttaaat-tttttttaatgaaaaattcagcttgtagtctaatatga 444
           ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 502 agatgcatttttgttttaaatatttttttcatgaaaaattcagcttgtagtctaatatga 561

                
Query: 445 ttgaa 449
           |||||
Sbjct: 562 ttgaa 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)