Query= MSMg01no237_m18.b1 MSMg01no237_m18.b1 CHROMAT_FILE:
MSMg01no237_m18.b1 PHD_FILE: MSMg01no237_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:42 2005
(315 letters)
>mm_chr2_60739169_60739885
Length = 717
Score = 565 bits (292), Expect = e-165
Identities = 308/314 (98%), Gaps = 2/314 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctttcacctaaagggatgagtagctctcttaaaaaatttcaaaacatctatt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctttcacctaaagggatgagtagctctcttaaaaaatttcaaaacatctatt 263
Query: 64 tcctgtcccgttgctcctgttgttgttttatactttattagcatttttt--aaataaaag 121
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 264 tcctgtcccgttgcttttgttgttgttttatactttattagcattttttttaaataaaag 323
Query: 122 agactctaaaaatatttttacatcccttaactggttgttcgtcaattcattcaaccaatg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agactctaaaaatatttttacatcccttaactggttgttcgtcaattcattcaaccaatg 383
Query: 182 tcggtgagtgagtatggtcgaggcaccggacactgagcaggaaggaggagccttccgcgg 241
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 384 tcggtgagtgagtatggtcgaggcaccggacaccgagcaggaaggaggagccttctgcgg 443
Query: 242 tcggtcgaggaggcaggagtaagctgatgctagaagaagcagtgacacatggtgactcac 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcggtcgaggaggcaggagtaagctgatgctagaagaagcagtgacacatggtgactcac 503
Query: 302 aggatttcaacata 315
||||||||||||||
Sbjct: 504 aggatttcaacata 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 717
Length adjustment: 9
Effective length of query: 306
Effective length of database: 708
Effective search space: 216648
Effective search space used: 216648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_m18.g1 MSMg01no237_m18.g1 CHROMAT_FILE:
MSMg01no237_m18.g1 PHD_FILE: MSMg01no237_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:42 2005
(285 letters)
>mm_chr2_60887698_60888374
Length = 677
Score = 505 bits (261), Expect = e-147
Identities = 276/285 (96%), Gaps = 8/285 (2%)
Strand = Plus / Minus
Query: 1 atacaaaagaagctggccttgatggccctggactcatgaggtgtgcctccagaagactcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 atacaaaagaagctggccttgatggccctggactcatgaggtgtgcctccagaagactcg 418
Query: 61 aagtaactgccatactctctactgtccttaatagtagccagcagcccagtaatgtcctta 120
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 417 aagtaactgccatactctctactgtccttaatagtagcca------cagta--gtcctta 366
Query: 121 cattactgtgtggccaggacctgaaggccacgcttcaaaaatccagggattcttccatcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cattactgtgtggccaggacctgaaggccacgcttcaaaaatccagggattcttccatcc 306
Query: 181 atcaaagagaggaaaagtgatgtcagtgtcaactcccagggctgaattctggagaatcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 atcaaagagaggaaaagtgatgtcagtgtcaactcccagggctgaattctggagaatcct 246
Query: 241 atggcacttgtaagcaaactctggccctcagatgagactacagcc 285
|||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 245 atggcacttggaagcaaactctggccctcagatgagactacagcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 677
Length adjustment: 9
Effective length of query: 276
Effective length of database: 668
Effective search space: 184368
Effective search space used: 184368
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
