BAC Information

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BAC

Clone NameMSMg01-260C09
Chromosome2 (Build37)
Map Location 113,413,251 - 113,413,646
singlet/doubletsinglet
Overlap geneFmn1
Upstream geneAven, Ryr3, 4930563P21Rik
Downstream geneGrem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770, Atpbd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260C09.T7 (MSMg01no260_c09.b1)MSMg01-260C09.TJ (MSMg01no260_c09.g1)
ACCAG402892AG402893
length797739
length of high quality
(start - end)
49 (256 - 304)395 (83 - 477)
definitionCHROMAT_FILE: MSMg01no260_c09.b1 PHD_FILE: MSMg01no260_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:09 2005CHROMAT_FILE: MSMg01no260_c09.g1 PHD_FILE: MSMg01no260_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAA
TTCTAATGAAATCTTATTAAGCACTTCATTTCTTCGTCACTGGCCATGTT
TTAGGTGCATAGAGACTACAGGAACGGAACCACTATTGACTGTTTCAGAG
GGCAAGAGATAGAATATTTCCTTTATTGTACAACTTGCACTGAACAGAGA
TAATCTAAATAATACTTTTCTCATAGCTTTGTGGGGCAAATTTAGGCATA
CGATAAATTATTTAAAGAGCCCATTGTGTATAATGCTTACATAGGACCTC
AGTGGCATCCAGAAACATTGGCTGTCTTTACCTTCTGCCTTGGTGAATGC
TTTTCTTATCTATTTGCCTTTTCCTCCTTTCCTCCTTCCCCTTCCCCGTC
CCTGTTTTGTTTCCCCCCTACCATTGAATCTAGAGTCTTGCCCACTATTC
TAGCACATCAATCCTTCCCAGTACTTGATTTTGAATTTGACACCGGAACT
ACTGTTTCAATCCATGCTGTTTCCTCAATTCACAGATTCATCCCAAGCGA
CTCACAAAAACTACATTATAGCCAACCTCGCTATACTCTGTGATTAAGGT
CTGTATATGAATGCTTTATCCTATCTCATAGTACGCTAACGAAATCAATC
ACCACACTATAACAAGACAAAAAACATAAACTACAAAAATACAAACTTTA
ATAATTGATCTATTATCAATACTATCATACTCAACCAACAAAAAAACAAA
TACAAAAAAANAAAAAAAAAAAATAATCACAAAAACAATACAATAAG
TAAAAAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAAAGCCACCTGGTCTC
CATCCCCTCTGTTCTCCGGAGGGAGGGCAGTGGAATGAGGAACAGTTTGG
GTTACGCTGCTTCTGTTCCTCCATTCGTTCTGCTTTTTTGAGCCAAATTA
CATTCCAAGCAGATTGGCCGCTCTTGGTGGATTGCCTGAAGGGCAGTGTA
AGGAAGGAGCAGCCTCCTCTCTCTGACTCCATCCTGCTATTGAAGGAATG
TAGAATGGCTTAGAGAGAGGAGAGGGAGCCCCTCTCCTGAGGGGTCGTAG
ACTCAGTGGGAGGAAAGACAACATGCTACAGAAAAGAAAGGAAACTATTG
GAAAGGCCTTTCTTTTTTTTTTCCCCCCAATTTTCTAAATTGGCCTCTAT
CAGTCCTAAAGAAACTGATTGACAGTGGCCTCGTCATCGGGTTGGTATGC
CAGCAGATCATGGCCACAGGGCACTTTTGATGGTTAGCTCCCTCAGACTG
TGTCTGTTTCATAGTCTTTGTCCATTTCATATTCTTTACTTTCAATACTC
AGTGGCTTGTAATGGGGAGAACAATTTAAATGAAGTTCTTTGAACTTCAA
GGTGTATTTCTAATTAAACTAAATTAAATGCCCCAACATAAACAAGCTGG
ATTTGAGAAACCCTACACAGAAGGTAAATGATAAAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_c09.g1 MSMg01no260_c09.g1 CHROMAT_FILE:
MSMg01no260_c09.g1 PHD_FILE: MSMg01no260_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:09 2005
         (395 letters)



>mm_chr2_113413051_113413846
          Length = 796

 Score =  700 bits (362), Expect = 0.0
 Identities = 387/400 (96%), Gaps = 9/400 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaaagccacctggtctccatcccctctgttctccggagggagggcagtggaatgaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 acaaagccacctggtctccatcccctctgttctccggagggagggcagtggaatgaggaa 537

                                                                       
Query: 61  cagtttgggttacgctgcttctgttcctccattcgttctgcttttttgagccaaattaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cagtttgggttacgctgcttctgttcctccattcgttctgcttttttgagccaaattaca 477

                                                                       
Query: 121 ttccaagcagattggccgctcttggtggattgcctgaagggcagtgtaaggaaggagcag 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 476 ttccaagcagattggccgctcttggtggattgcctgaagggcggtgtaaggaaggagcag 417

                                                                       
Query: 181 cctcctctctctgactccatcctgctattgaaggaatgtagaatggcttagagagaggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cctcctctctctgactccatcctgctattgaaggaatgtagaatggcttagagagaggag 357

                                                                       
Query: 241 agggagcccctctcctgaggggtcgtagactcagtgggaggaaagacaacatgctacaga 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 agggagccccactcctgaggggtcgtagactcagtgggaggaaagacaacatgctacaga 297

                                                                       
Query: 301 aaagaaaggaaactattggaaaggcctttc-----ttttttttttccccccaattttcta 355
           ||||||||| ||||||||||||||||||||     |||||||||||     |||||||||
Sbjct: 296 aaagaaagggaactattggaaaggcctttcattttttttttttttct----aattttcta 241

                                                   
Query: 356 aattggcctctatcagtcctaaagaaactgattgacagtg 395
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aattggcctctatcagtcctaaagaaactgattgacagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 796
Length adjustment: 9
Effective length of query: 386
Effective length of database: 787
Effective search space:   303782
Effective search space used:   303782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)