BAC Information

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BAC

Clone NameMSMg01-261G23
Chromosome2 (Build37)
Map Location 38,781,086 - 38,938,878
singlet/doubletdoublet
Overlap geneNr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik
Upstream geneDennd1a, LOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1
Downstream geneLOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261G23.T7 (MSMg01no261_g23.b1)MSMg01-261G23.TJ (MSMg01no261_g23.g1)
ACCAG403822AG403823
length747771
length of high quality
(start - end)		503 (46 - 548)401 (74 - 474)
definitionCHROMAT_FILE: MSMg01no261_g23.b1 PHD_FILE: MSMg01no261_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:49 2005CHROMAT_FILE: MSMg01no261_g23.g1 PHD_FILE: MSMg01no261_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,938,380 - 38,938,878)(38,781,086 - 38,781,486)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATATCTGAATAACAAGTAGTTTGATCCTTTGCTGTAGAAGACTTC
CTGGTTTTTATAGATTTAAAAATTGCCTCGGATTTTTCTTGTCACACCCA
TATAGCATGATTTTTCTACATCTTTGATTACATACCTTAGGCATCTTTGA
AGACCGTAGAACTCCTGGCCTAGGAAACTTCTCAGGCTGTGTGTAAAAGT
TAGGATACTTGAATTGACACAACTTCAAAGGCTTTTTTTTCTTGTTTTGT
TTTGTTTTCTGTGAATTTTTATCTTATACTTTTAAAATACAAACTTCAGA
ATTCACCAGAAGGACAAGTTTGTTTGGGCCATTTTGCCAGTGGCTACAAA
GAGAAGCCTTTTTACCCTTACCACTTTGTCCTCAATAGGTTACACATAAG
ATCCATTTCTAACTCCCAGTCATTTCCTAAGTCAAATGTTAAGTGAAACT
TCACACTGTCTTAGCAGTACTTGAACTGTTTCACTGTCTCCCTGACTGTG
AATAGTGCCGATGTCTCTCTGTGGGAGATGGCATTTNACTGCTACTTCCC
AGCCCGAAGTCCTGTCTGCTGACATAGTTTGACACAGGAAGTGATGGTCC
GCACTTGGATGCCTGACAGAAGCTGGAGCCTTAAACCGCTGTTTTATGGT
AATTTTTGCTATCTTAACCGCAACATCTTGTACAGTTTTATGTTTAT

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGCACCCCGGAAGAGATAGGCTGGG
CGGCGCGGGAAGCGTCCGGCAAACGCCGGGAAAAGGCAGGTGTCCCGGAG
CCCCAGGATCCCGCTGGAGACCTGAGCCAGCAGAAAGTCGTCGCCTAGAA
GAATGAGTCTGAGTAAAGGAAGGCCAGGGGACAGGAGTGAGCACCGAGGT
CCGAGAAGGACCATTACCGGTCTGCCCAGAGGCGGAGGCTCACGGGCTGG
GAGGAAGCTCGGGACAGTGGAGGAGGAAAACGCTCCAGGATAGGTGCAGG
GCGCAAAGGTGTGGAGTCTGCGAGCTCCCTGGTGAAGGAAGAGAGGGTGC
TCCGTGCACCAGGGCCTCCTGGGGGAGGAGAAAGGGTTGGCGCAGAGGGG
ACGGGGGGAGGGGAGGGTCCGAGCAGAGGGGACCGGGGACCCTGCCTGGA
GAGTGCGAGCCCTGTGTGGAGTCCTCACTGATGAGCTGTCCGGCTTTCCC
GTAGCTAGAGTCCGCTTAGACATAGAGTTGTTTTGCGCCTGTTTTTTTTT
TTCCAGCCTTTCTTTTTTTTCCCCCTACCCACTATTTGCCTCTCTCCTTT
CTTTCCCTCCCCTTTATTTTTTTCTTCTTCCCTCTCTCTTTCTTTCTTAT
TATCCCCCCCTTTGTTCCTTTCACCTATTTTTGTCCCCCTTTATTTTCTT
ATCTTTCTGCTCTTTCACTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_g23.b1 MSMg01no261_g23.b1 CHROMAT_FILE:
MSMg01no261_g23.b1 PHD_FILE: MSMg01no261_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:49 2005
         (503 letters)



>mm_chr2_38938176_38939078
          Length = 903

 Score =  903 bits (467), Expect = 0.0
 Identities = 491/499 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatatctgaataacaagtagtttgatcctttgctgtagaagacttcctggttttt 64
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gaattcatatctgaaaaagaagtagtttgatcctttgctgtagaagacttcctggttttt 644

                                                                       
Query: 65  atagatttaaaaattgcctcggatttttcttgtcacacccatatagcatgatttttctac 124
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 atagatttaaaaattggttcggatttttcttgtcacacccatatagcatgatttttctac 584

                                                                       
Query: 125 atctttgattacataccttaggcatctttgaagaccgtagaactcctggcctaggaaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atctttgattacataccttaggcatctttgaagaccgtagaactcctggcctaggaaact 524

                                                                       
Query: 185 tctcaggctgtgtgtaaaagttaggatacttgaattgacacaacttcaaaggcttttttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tctcaggctgtgtgtaaaagttaggatacttgaattgacacaacttcaaaggcttttttt 464

                                                                       
Query: 245 tcttgttttgttttgttttctgtgaatttttatcttatacttttaaaatacaaacttcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tcttgttttgttttgttttctgtgaatttttatcttatacttttaaaatacaaacttcag 404

                                                                       
Query: 305 aattcaccagaaggacaagtttgtttgggccattttgccagtggctacaaagagaagcct 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 403 aattcaccagaaggacaagtttgtttgggccattttgccagtggctacaaagggaagcct 344

                                                                       
Query: 365 ttttacccttaccactttgtcctcaataggttacacataagatccatttctaactcccag 424
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttttacccttagtactttgtcctcaataggttacacataagatccatttctaactcccag 284

                                                                       
Query: 425 tcatttcctaagtcaaatgttaagtgaaacttcacactgtcttagcagtacttgaactgt 484
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tcatttcctaggtcaaatgttaagtgaaacttcacactgtcttagcagtacttgaactgt 224

                              
Query: 485 ttcactgtctccctgactg 503
           |||||||||||||||||||
Sbjct: 223 ttcactgtctccctgactg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no261_g23.g1 MSMg01no261_g23.g1 CHROMAT_FILE:
MSMg01no261_g23.g1 PHD_FILE: MSMg01no261_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:49 2005
         (401 letters)



>mm_chr2_38780886_38781686
          Length = 801

 Score =  768 bits (397), Expect = 0.0
 Identities = 400/401 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagcaccccggaagagataggctgggcggcgcgggaagcgtccggcaaacgccgggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagcaccccggaagagataggctgggcggcgcgggaagcgtccggcaaacgccgggaaa 260

                                                                       
Query: 61  aggcaggtgtcccggagccccaggatcccgctggagacctgagccagcagaaagtcgtcg 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcaggtgtcccggtgccccaggatcccgctggagacctgagccagcagaaagtcgtcg 320

                                                                       
Query: 121 cctagaagaatgagtctgagtaaaggaaggccaggggacaggagtgagcaccgaggtccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctagaagaatgagtctgagtaaaggaaggccaggggacaggagtgagcaccgaggtccg 380

                                                                       
Query: 181 agaaggaccattaccggtctgcccagaggcggaggctcacgggctgggaggaagctcggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaggaccattaccggtctgcccagaggcggaggctcacgggctgggaggaagctcggg 440

                                                                       
Query: 241 acagtggaggaggaaaacgctccaggataggtgcagggcgcaaaggtgtggagtctgcga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagtggaggaggaaaacgctccaggataggtgcagggcgcaaaggtgtggagtctgcga 500

                                                                       
Query: 301 gctccctggtgaaggaagagagggtgctccgtgcaccagggcctcctgggggaggagaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctccctggtgaaggaagagagggtgctccgtgcaccagggcctcctgggggaggagaaa 560

                                                    
Query: 361 gggttggcgcagaggggacggggggaggggagggtccgagc 401
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggttggcgcagaggggacggggggaggggagggtccgagc 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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