BAC Information

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BAC

Clone NameMSMg01-261O07
Chromosome2 (Build37)
Map Location 112,611,923 - 112,612,423
singlet/doubletsinglet
Overlap geneRyr3
Upstream geneOlfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven
Downstream gene4930563P21Rik, Fmn1, Grem1, LOC100043520
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261O07.T7 (MSMg01no261_o07.b1)MSMg01-261O07.TJ (MSMg01no261_o07.g1)
ACCAG404146AG404147
length736730
length of high quality
(start - end)		690 (47 - 736)522 (83 - 604)
definitionCHROMAT_FILE: MSMg01no261_o07.b1 PHD_FILE: MSMg01no261_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:23 2005CHROMAT_FILE: MSMg01no261_o07.g1 PHD_FILE: MSMg01no261_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTACCTGTAGCAATACCGAATGGCGGAGAAACACCTGAAAAAAT
GTTCAGCATCCTTAATCATCAGAGAAATGAAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGCTAGAATGGCTAAGATCAAAATTTCAGGTGACAG
CAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCACTGTCGGT
GGGATTACAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
AGAAAATTGGACATAGTACTACAGGAGGATCAAGCAATACCTCTCCTGGG
CATATATCCAGAAGATGTTCCAACTAGTAAGAAAGACACATGCTCCACTA
TGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAGAACCCAGA
TGCCCCTCAACAGAGGAATGGATACAAAAAAATTTGGTACATTTACACAA
TGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGC
AAATGAATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACA
AAAGAACTCAAATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAA
ACAGAATACCCAAGATATATGATACAATTTGCAAAACACATGATACTCAA
GAAGAATGAAGACCAAAGTGTGGACACTTTGCCCCT

TTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAGCACAGCTGCACAT
CACTAATAGGATCAATTACTCAAGGAGCAGTCATGCTAGAGCCCGGATTC
TATCCCTCAGGATTTTGAATCCTGGGGCTGGGATATGGGAACTGGGATAT
TTATCTAGGATCTCAGAAAGTGATTCTAATTCACAGCCTGGCAGGGAAAC
TGCTGGGTTAAAGCAGCAGGATGGGATCCTAGCCCATGGTGTGATACCAG
TTACTCAAAAGCATCTCACCCTTTGTCCTTGCAGACGCGTTGGTTGCAGA
TTCCCAAGGCTCTTTGCTGCCCTTGATACCTGTGTCCATTGGCAAAAGCT
ACTGTCTCCCCCCCCCTCCCACCTCCGTGGCCTTTTGCTTAAGTCTCGGG
AAACCCGGAGGTGGACTGTTTTGATTTACATGTAGAGTTTTGTTTCTGTA
TAAAAGTTCTCTTTTAGCCGGGCGTGAGTTGGAGACCAGCCTGGTCTACA
AAGTGAGTTCCAGGACAGCCAAAGCTACACAGAGAAACCCTGTCTCGAAA
AACCTTTTCCCACATTATATATTTCCCTTTATTTTCCCCCATTTTATACT
TCCCCGTTCTCCCTTTTATATAGTGGAGAAATCTTTCTGGGTTTTCATTT
TCCGAACTAGATAATTAGCCCACTTAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_o07.g1 MSMg01no261_o07.g1 CHROMAT_FILE:
MSMg01no261_o07.g1 PHD_FILE: MSMg01no261_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:23 2005
         (522 letters)



>mm_chr2_112611722_112612639
          Length = 918

 Score =  791 bits (409), Expect = 0.0
 Identities = 486/525 (92%), Gaps = 27/525 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaagcacagctgcacatcactaataggatcaattactcaaggagcagtcatgctagagc 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ccaagcacagctgcacat-actaataggatcaattactcaaggagcagtcatgctagagc 260

                                                                       
Query: 61  ccggattctatccctcaggattttgaatcctggggctgggatatgggaactgggatattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccggattctatccctcaggattttgaatcctggggctgggatatgggaactgggatattt 320

                                                                       
Query: 121 atctaggatctcagaaagtgattctaattcacagcctggcagggaaactgctgggttaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 atctaggatctcagaaagtgattctaattcacagcctggcagggaaactgctggattaaa 380

                                                                       
Query: 181 gcagcaggatgggatcctagcccatggtgtgataccagttactcaaaagcatctcaccct 240
           |||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 381 gcagcaggttgggatcctagcccatggtgtgataccagctactcaaaagcatcacaccct 440

                                                                       
Query: 241 ttgtccttgcagacgcgttggttgcagattcccaaggctctttgctgcccttgatacctg 300
           ||||||||||||||||||||    ||||||||||||||||||||||||||||||| ||||
Sbjct: 441 ttgtccttgcagacgcgttg----cagattcccaaggctctttgctgcccttgatgcctg 496

                                                                       
Query: 301 tgtccattggcaaaagctactgtctccccccc-cctcccacctccgtggccttttgctta 359
           |||||||||||||||||||||||||||||||| || ||||      || |||       |
Sbjct: 497 tgtccattggcaaaagctactgtctcccccccacccccca------tgacct-------a 543

                                                                       
Query: 360 agtctcgggaaaccc--ggaggtggactgttttgatttacatgtagagttttgtttctgt 417
           |||||| ||        |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 544 agtctcagg------ttggaggtggactgttttgatttatatgtagagttttgtttctgt 597

                                                                       
Query: 418 ataaaagttctcttttagccgggcgtgagttggagaccagcctggtctacaaagtgagtt 477
           ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 598 ataaaagttctcttttagccgggtgtgagttcgagaccagcctggtctacaaagtgagtt 657

                                                        
Query: 478 ccaggacagccaaagctacacagagaaaccctgtctcgaaaaacc 522
           ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 658 ccaggacagccaaggctacacagagaaaccctgtctcgaaaaacc 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 918
Length adjustment: 10
Effective length of query: 512
Effective length of database: 908
Effective search space:   464896
Effective search space used:   464896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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