Query= MSMg01no262_g09.b1 MSMg01no262_g09.b1 CHROMAT_FILE:
MSMg01no262_g09.b1 PHD_FILE: MSMg01no262_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:02 2005
(517 letters)
>mm_chr2_17455883_17456800
Length = 918
Score = 932 bits (482), Expect = 0.0
Identities = 506/514 (98%), Gaps = 1/514 (0%)
Strand = Plus / Plus
Query: 5 gaattctcagcttcta-tcaaccttttataacatcatagagacacttggagatgtttgca 63
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagcttcaaattaaccttttataacatcatagagacacttggagatgtttgca 264
Query: 64 gatttttcaggtctccatgtactgacatccaactttatcagactcaggagtctcgtttta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatttttcaggtctccatgtactgacatccaactttatcagactcaggagtctcgtttta 324
Query: 124 caaaaggtaagcctatattttattacaaaacaagtaatataaatatataatgatgtaaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaaaggtaagcctatattttattacaaaacaagtaatataaatatataatgatgtaaat 384
Query: 184 acatataatattttaattaatttcttcaccagctctataatgatcatttgcaagatattt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acatataatattttaattaatttcttcaccagctctataatgatcatttgcaagatattt 444
Query: 244 gactatgtgtgagcacttgacagaagagactcagccatgggcaaactcatcgtgtgcttc 303
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 gactatgtgtgagcacttaacagaagagactcagccatgggcaaactcatcatgtgcttc 504
Query: 304 agctgctctcttactagctgtgtgacctcaggcaggatacttaacctctctgagactgct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agctgctctcttactagctgtgtgacctcaggcaggatacttaacctctctgagactgct 564
Query: 364 tcctcaagcaccaaacaaggatgattgcaataaaatactgacggtacctttgagtgtaag 423
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcctcaagtacaaaacaagggtgattgcaataaaatactgacggtacctttgagtgtaag 624
Query: 424 ttaaatgagatggtgcatctagtgatttctgctatattccaggctctgtactggtcactt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttaaatgagatggtgcatctagtgatttctgctatattccaggctctgtactggtcactt 684
Query: 484 ttcatactataggagtacagattagacaggtatg 517
||||||||||||||||||||||||||||||||||
Sbjct: 685 ttcatactataggagtacagattagacaggtatg 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 918
Length adjustment: 10
Effective length of query: 507
Effective length of database: 908
Effective search space: 460356
Effective search space used: 460356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_g09.g1 MSMg01no262_g09.g1 CHROMAT_FILE:
MSMg01no262_g09.g1 PHD_FILE: MSMg01no262_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:02 2005
(526 letters)
>mm_chr2_17601851_17602776
Length = 926
Score = 756 bits (391), Expect = 0.0
Identities = 443/483 (91%), Gaps = 36/483 (7%)
Strand = Plus / Minus
Query: 50 gttgtgcacagaggcaagtggattccactagtcagccaaatagcagcgtccagattcagt 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 gttgtgcacagaggcaagtggattccactagtcagccaaatagcagcgtccagattcagt 867
Query: 110 gaggaactctgtctcaaagaataatgtggagcggaataggggaagatacccagtgttgac 169
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 866 gaggaactctgtctcaaagaataatgtggagcggaataggggaagatacccagtattgac 807
Query: 170 ttctggtttcaatgcatttgcacatt------tgcatctacatccatgtacacacacaca 223
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 806 ttctggtttcaatgcatttgcacatttgcatatgcatctacatccatgtacacacacaca 747
Query: 224 cacacacacacacacacactctcacacacacacacacacacagagacacagagggagaca 283
||||||||||||| ||||| |||||||||||
Sbjct: 746 cacacacacacac------------------------------agacatagagggagaca 717
Query: 284 gagagacagacagagagcagagaggcacggaaccatgagctgctggtcctgagacacaca 343
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 716 gagagacagacagagagcagagaggcatggaaccatgagctgctggtcctgagacataca 657
Query: 344 agatttaattaatgcactttttaaaaatgggatcagtgtacttatcaacttgatgataaa 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 agatttaattaatgcactttttaaaaatgggatcagtgtacttatcaacttgatgataaa 597
Query: 404 ggactttaatactgtgctattttatgtgtagatgcgaagtaagtatgattggacctaaat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ggactttaatactgtgctattttatgtgtagatgcgaagtaagtatgattggacctaaat 537
Query: 464 gatattgttgctagttgatataagtaacttagattatttaccaatgttgaaagaaaatta 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gatattgttgctagttgatataagtaacttagattatttaccaatgttgaaagaaaatta 477
Query: 524 ccc 526
|||
Sbjct: 476 ccc 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
