BAC Information

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BAC

Clone NameMSMg01-262H11
Chromosome2 (Build37)
Map Location 83,848,217 - 83,848,815
singlet/doubletsinglet
Overlap genenone
Upstream geneFsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119
Downstream geneLOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262H11.T7 (MSMg01no262_h11.b1)MSMg01-262H11.TJ (MSMg01no262_h11.g1)
ACCAG404559AG404560
length733736
length of high quality
(start - end)
603 (41 - 643)427 (73 - 499)
definitionCHROMAT_FILE: MSMg01no262_h11.b1 PHD_FILE: MSMg01no262_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:08 2005CHROMAT_FILE: MSMg01no262_h11.g1 PHD_FILE: MSMg01no262_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGGTTTGCATTTTATCCAGGAAGACATCTGTTTGCTAAAAACTAATAAT
AGCAGAAACCTAATGACGTGCCAAACAAGTTATTTTAATAGAAATGCTTT
GTTTTGAGAGTTTAAGGTTGGTTACTCAGCAGAACAGCCATGTTTCTCAG
GGTTTTGTGGGGAGTCTTCACGAGTAGACACATTGCTAGGACACATTCTG
AAGGCAAGGTAACTATCTGCCAAGTGCTCTCCCTCTGACCTTCCACGATC
AACTGCACTGAAAGAGTGGGTGGATGCTGGTAGCAAGTCATGGCTTAGAC
GGTGGCAGTACACATGGGAGGCTGTCCATTGTTTCCATAAGGACAAATAT
TCATTCAAATGTCTAATGACTTTCTCGAAATCTCCTTAAAATAAAAATTC
CACCCGGGTTTTTTTGGATTTATTATCTCTCCTCCCTCATTTTCCTCTTA
CGTTTTCTTGCTCTGTATAAAGTAACACAGAGAACTGAATGCTTGTTCAA
GATGGAAAAGATGGAAAAGGGGATAGAAGTTATGATTGGGTTCAGATTCA
TACTGTGGTTTATTTCAGCGTTTACTTTGCAATTTCTTGCCTAGTTGGCA
TGGCTTTCATTTAAACACTGGACCAGCGGACATGCTCATTTGGAAAACAC
ATACCATTTTATCCAGCTATGTCTCAGGTGTCA
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTCAGAAGCAGAGAGAAGCCAGATTAT
ATCTGTCAGCTTGTGAGATTGTTTAGTGCTGTCATGGGAGTTCTGAGTGT
GCAAACAAATGGGTCTCTGATTCTTGTGCTTTGTTTGGGCTCTTCTACTT
CTATTGGTTTGTATTTCCCAACTTTGATGTGATAGTTTTCGTTTTATCGT
ATTATACTTTATTTTGTTATAAGTTTTTAAATGAATGAATAAATGAATGA
ATGAAGGAACAAAAACGTAATCACTAGGGTTAAGGTTAACAACTGAACTG
TCTCATCTGCTGAGGGAGGGAAAAATCAGTTTTCTCCAATAGAGTGACAC
TGGGTATCTCAACCACTCCACGACAGGCCTCATGTTCAGGAGTTGCTGAC
CAACACAAAATGGACCCCACAGGGTTTGGTTTGTGTGCTTTTATTTGGTT
ACAGTTTGCCTTCTTTGTCTTCTGTCTTTCCTTTTTGGACGTGGTTGTAT
TTTGTTTTCTTGCATTGCTCAGCCACTTTACAACTTCATAATTATTTTTC
TTTTTTTTTTTCTTTCCTCCCCATTTATTTCTTTTTTTCTCCTTTCTATC
TTTTATCTTCACATTTTTTTTTTATATTTTTATTCTATCTCCCACTATTA
TCCCCACCTTTATTTTTTTCATCTTTATTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_h11.b1 MSMg01no262_h11.b1 CHROMAT_FILE:
MSMg01no262_h11.b1 PHD_FILE: MSMg01no262_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:08 2005
         (603 letters)



>mm_chr2_83848013_83849015
          Length = 1003

 Score = 1127 bits (583), Expect = 0.0
 Identities = 595/599 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctggtttgcattttatccaggaagacatctgtttgctaaaaactaataatagca 64
           |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctggcttggattttatccaggaagacatctgtttgctaaaaactaataatagca 264

                                                                       
Query: 65  gaaacctaatgacgtgccaaacaagttattttaatagaaatgctttgttttgagagttta 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaacctaatgatgtgccaaacaagttattttaatagaaatgctttgttttgagagttta 324

                                                                       
Query: 125 aggttggttactcagcagaacagccatgtttctcagggttttgtggggagtcttcacgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggttggttactcagcagaacagccatgtttctcagggttttgtggggagtcttcacgag 384

                                                                       
Query: 185 tagacacattgctaggacacattctgaaggcaaggtaactatctgccaagtgctctccct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagacacattgctaggacacattctgaaggcaaggtaactatctgccaagtgctctccct 444

                                                                       
Query: 245 ctgaccttccacgatcaactgcactgaaagagtgggtggatgctggtagcaagtcatggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgaccttccacgatcaactgcactgaaagagtgggtggatgctggtagcaagtcatggc 504

                                                                       
Query: 305 ttagacggtggcagtacacatgggaggctgtccattgtttccataaggacaaatattcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttagacggtggcagtacacatgggaggctgtccattgtttccataaggacaaatattcat 564

                                                                       
Query: 365 tcaaatgtctaatgactttctcgaaatctccttaaaataaaaattccacccgggtttttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcaaatgtctaatgactttctcgaaatctccttaaaataaaaattccacccgggtttttt 624

                                                                       
Query: 425 tggatttattatctctcctccctcattttcctcttacgttttcttgctctgtataaagta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggatttattatctctcctccctcattttcctcttacgttttcttgctctgtataaagta 684

                                                                       
Query: 485 acacagagaactgaatgcttgttcaagatggaaaagatggaaaaggggatagaagttatg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acacagagaactgaatgcttgttcaagatggaaaagatggaaaaggggatagaagttatg 744

                                                                      
Query: 545 attgggttcagattcatactgtggtttatttcagcgtttactttgcaatttcttgccta 603
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 745 attgggttcagattcatactgtggtttatttcagtgtttactttgcaatttcttgccta 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)