Query= MSMg01no262_i12.b1 MSMg01no262_i12.b1 CHROMAT_FILE:
MSMg01no262_i12.b1 PHD_FILE: MSMg01no262_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:12 2005
(593 letters)
>mm_chr2_17213811_17214803
Length = 993
Score = 1038 bits (537), Expect = 0.0
Identities = 574/593 (96%), Gaps = 13/593 (2%)
Strand = Plus / Minus
Query: 13 attcttatgtacctggtgagctcgggttgggcctaagtgtctgcttataacatgctcaga 72
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 attcttatgtagctggtgagctcgggttgggcctaagtgtctgcttataacatgctcaga 564
Query: 73 tgatgctgatgttgtgggtttatacatgagcttcatagttactattactgaggatttact 132
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 563 tgatgctgatgttgtgggtttatacatgagcttcatagttactattactgaggattcact 504
Query: 133 gaaagaatccctcttcttgtcctttgcccttctggctagtttagaagacacgaagccctc 192
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaaagaatccctcttcttgtcctctgcccttctggctagtttagaagacacgaagccctc 444
Query: 193 acctcctttaaaacaactatagtaagttagaacaataaaaaacccttccttctgaagatt 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acctcctttaaaacaactatagtaagttagaacaataaaaaacccttccttctgaagatt 384
Query: 253 ttgtttctcaaggaaggaaatggatatatctccctcctttagacactttcaaacttcctg 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttgtttctcaaggaaggaaatggatatatctccctcctttagacactttcaaacttcctg 324
Query: 313 tctcctctcatttaggaatgagtgc-----------gggggggaaagagcgacactcaaa 361
||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 323 tctcctctcatttaggaatgagtgcgggggggtgggggggggggaagagcgacactcaaa 264
Query: 362 tttctttgatt-tctcctatgtgcaaatcagctcttttctccggaaagaaggggtgagga 420
||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 263 tttctttgattgt-tcctatgtgcaaatcagcttttttctccggaaagaaggggtgagga 205
Query: 421 gacttgaaaatacctaacaaataacttctttggtccacctcacttctttgatgaaattcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gacttgaaaatacctaacaaataacttctttggtccacctcacttctttgatgaaattcc 145
Query: 481 cggaattcaaactcatagtacaagtctgaacagtttgttttcaaagcacagaaaactcag 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 144 cggaattcaaactcatagtacaagtctgaacagtttgttttcaaagcacagaaaacacag 85
Query: 541 gcagctcccatttctacatgggcttcatcacaattttcttgttctacatgtca 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 gcagctcccatttctacatgggcttcatcacaattttcttgttctacatgtca 32
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_i12.g1 MSMg01no262_i12.g1 CHROMAT_FILE:
MSMg01no262_i12.g1 PHD_FILE: MSMg01no262_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:12 2005
(509 letters)
>mm_chr2_17059703_17060611
Length = 909
Score = 978 bits (506), Expect = 0.0
Identities = 509/510 (99%), Gaps = 1/510 (0%)
Strand = Plus / Plus
Query: 1 atgtttccactgattgactgtaagtatgctggttaacttctaacttcctcataccctcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtttccactgattgactgtaagtatgctggttaacttctaacttcctcataccctcaa 260
Query: 61 aagcttccagtctctgcttcatcctgatgactcttctgggacaatggatggcttttgagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcttccagtctctgcttcatcctgatgactcttctgggacaatggatggcttttgagt 320
Query: 121 taccatttaggcatctggtgttgtgagtgtaatgaaaaataaaaagttatatgattacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taccatttaggcatctggtgttgtgagtgtaatgaaaaataaaaagttatatgattacat 380
Query: 181 ttaaaaatattctaatttttaagttttaagaaaaaaaagactctagggagagatatcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaaaatattctaatttttaagttttaagaaaaaaaagactctagggagagatatcatt 440
Query: 241 tttgtctgaaaaataattgtcacactatcataatataaaaggctcattacatggtagaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgtctgaaaaataattgtcacactatcataatataaaaggctcattacatggtagaag 500
Query: 301 atgtattagaattgaacttccttgtcagtcttcaaatt-aaaatattcatatggaaaaag 359
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 atgtattagaattgaacttccttgtcagtcttcaaatttaaaatattcatatggaaaaag 560
Query: 360 tgttagatttggaattagcatctactcttgcaataaccatttcctgtggttcagtggaac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttagatttggaattagcatctactcttgcaataaccatttcctgtggttcagtggaac 620
Query: 420 aacactcaaagtggaaacaataatagtaatcatattttaatattgctttgtgggttgaat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacactcaaagtggaaacaataatagtaatcatattttaatattgctttgtgggttgaat 680
Query: 480 acacacacacacacacacacacacacacac 509
||||||||||||||||||||||||||||||
Sbjct: 681 acacacacacacacacacacacacacacac 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
