Query= MSMg01no263_j18.b1 MSMg01no263_j18.b1 CHROMAT_FILE:
MSMg01no263_j18.b1 PHD_FILE: MSMg01no263_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:34 2005
(659 letters)
>mm_chr2_179618095_179619150
Length = 1056
Score = 1180 bits (610), Expect = 0.0
Identities = 644/656 (98%), Gaps = 3/656 (0%)
Strand = Plus / Plus
Query: 4 ggaattccccagtaatcgctcaggcttcacatgctgtctgcctctgccctgttgcagaag 63
|||||||||||||||| | ||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 204 ggaattccccagtaat-ggtcaggcttcacatgccatctgcctctgccctgctgcagaag 262
Query: 64 ctgaggcagttggctgtggatgctcccacactgggatgcatctgatggcatctgagcaag 123
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccgaggcagttggctgtggatgctcccacactgggatgcatctgatggcatctgagcaag 322
Query: 124 cgtcctaggcctgttctctcaagcttcctttgaggaaaccagccaggaaggtcattcggg 183
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 catcctaggcctgttctctcaagcttcctttgaggaaaccagccaggaaggtcattcggg 382
Query: 184 gagaggctggtggctggagagctgtggtatgtggctgccttgcttatggtcgtcaaggtg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gagaggctggtggctggagagctgtggtatgtggctgccttgcttatggtcgtcaaggtg 442
Query: 244 tgacagcctgaccctcccacagaataacagcaagctgcacactgagttctgtatcatcgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgacagcctgaccctcccacagaataacagcaagctgcacactgagttctgtatcatcgt 502
Query: 304 ctgttgatggtaactcagggtcacagtttattctcacgaagtccactctcagcatcccct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctgttgatggtaactcagggtcacagtttattctcacgaagtccactctcagcatcccct 562
Query: 364 cggctagcacttgcctacgttccaaccaggtgcttttctcagcattgggggcctggaaac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cggctagcacttgcctacgttccaaccaggtgcttttctcagcattgggggcctggaaac 622
Query: 424 accgacagtaccatcttccccagggctcccccgcacttgcctttagaacctgtaaccaga 483
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 623 accgacagtaccatctcccccagggc--ccccgcacttgcctttagaacctgtaaccaga 680
Query: 484 aggcagcagggtctttgcagatgtaacagtgttgaaggccttaaggtttgaggtgagtct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggcagcagggtctttgcagatgtaacagtgttgaaggccttaaggtttgaggtgagtct 740
Query: 544 agaccatctgcatcaacccagtgcagcctcaggagcctttaagaaagggagcaaaaaggt 603
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agaccatctgcatcagcccagtgcagcctcaggagcctttaagaaagggagcaaaaaggt 800
Query: 604 caggggatgtcttagtcaggggttctgttgttgtgattaaaagcggggctgaagcc 659
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 801 caggggatgtcttagtcaggggttctgttgttgtgattaaaagtggggctgaagcc 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1056
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1046
Effective search space: 678854
Effective search space used: 678854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no263_j18.g1 MSMg01no263_j18.g1 CHROMAT_FILE:
MSMg01no263_j18.g1 PHD_FILE: MSMg01no263_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:34 2005
(292 letters)
>mm_chr2_179760664_179761355
Length = 692
Score = 532 bits (275), Expect = e-155
Identities = 287/291 (98%)
Strand = Plus / Minus
Query: 1 ccgtagaatcacaagcttcacaaagttccctgataatctgtgagagccccccgatgggca 60
|||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||
Sbjct: 491 ccgtagaatcccaagcttcacaaagttccctgataatctgtgaaagccctctgatgggca 432
Query: 61 gagctctttgtagaacctcttttctcacatctgactttgcagatggacccttaggccctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gagctctttgtagaacctcttttctcacatctgactttgcagatggacccttaggccctc 372
Query: 121 atcacaagctgcagctgaggagattttctgaggcaagcacgaaatctccctagccctggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 atcacaagctgcagctgaggagattttctgaggcaagcacgaaatctccctagccctggt 312
Query: 181 acaaagaacaggccatggttgctgcagaaacaaagggaacaaatctccaaactcagaccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 acaaagaacaggccatggttgctgcagaaacaaagggaacaaatctccaaactcagaccc 252
Query: 241 ccaacattagtttctatgttcataaggaaatcctggacccaacggaccctc 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ccaacattagtttctatgttcataaggaaatcctggacccaacggaccctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
