BAC Information

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BAC

Clone NameMSMg01-264L09
Chromosome2 (Build37)
Map Location 111,053,526 - 111,053,814
singlet/doubletsinglet
Overlap gene4930430A15Rik
Upstream geneBbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15, LOC668802, LOC623270, LOC623301
Downstream geneOlfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264L09.T7 (MSMg01no264_l09.b1)MSMg01-264L09.TJ (MSMg01no264_l09.g1)
ACCAG406181AG406182
length723921
length of high quality
(start - end)
294 (430 - 723)243 (132 - 374)
definitionCHROMAT_FILE: MSMg01no264_l09.b1 PHD_FILE: MSMg01no264_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:58 2005CHROMAT_FILE: MSMg01no264_l09.g1 PHD_FILE: MSMg01no264_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAATCCGCGGAA
TTCATGAATTTTCTNAAAAAATGGATGGAACTAGAAAATATCATCCTGAG
TGAAATATCTTATTTCCACCCGTACATGCATGGTATGTACTCACTAATAA
ATGGATATTAGCTAAAAAAAAAAAAAAAGGTACAGATTACTCAGGAAACA
ATCCACAGGATTCAAGGTTAACAAGTCCAAGGATCCAAGTGAAGAGGTCT
CAATCCCACTTGGGATAGATAAGAAAGCAGTCATCAGGGCAGACAAGAGA
GGGAGGGACGTGTTTTTTTTACATGATCAGGTATTGGGAGACAGGGAAAC
AGGATGGATGNCTTGACCCNNACCAGCCCCCAACTGAAACAGGCAACTTC
GAGATGTAGGAGGTGGGGGACCAAATACTAAAATGAAACTTGGAACATGA
TGTGCATACAATATGTGTATATGAAAATTTATAAAATAAAAAATTAAAAA
TATTTAAGTTTTAAACTTGCTTTAGGGCATGCTAAATAAAGAGGACCACT
TCACTCCTAGAACTGAAGGATGATTTGCACAATGTAAAAAGTTTGCATCC
TCAAATAAAAGTTTCCACTTCTAGAAGAGAAACTTTATGTGGTTATATAT
TAGGTCATTATAACTACTAGTATTATGTAAGAAAGAAATTTAAGATCTCA
TTTCAAAGTTAATTCAGCATTTC
TTTTTTCTTTTTTTTTTCTTTTTTTATTTTTTTANATTTATTTTNTTCNN
ANCTACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAAGGCTGAAAGAAGCT
GAGGAGAAGGATGATCCTGTAGGATGACCCCCAGTCTCAATTTATCTGGA
CCCCTGAGATCTCTTAAACCCTGGACCACCCAAACAGACAGCATATACCC
AACACACATAGAGTAGAGGACTTCTCGGTCTGTGTTCATTCAGAGATGAT
GCACATACCTCTAGAGACTGGAGGTCCCAGGAAGTTTAGAGGTCAGGTGG
GGGCATCCACATGGAGACAGGGGGTGGTTTAGGAGGTGTTTTATATTACT
CTCTCTTGAAATTAATATTTTTTTTTTTTCCCCCCCCCCCCCCCCCTCTG
TTAATTTTATATTATATAAGTAATTATGCCCCCCCCCCCTTTATATAAAA
AAATAATCTCCCATATTATTTATGTTTAACACAATTCAATATACAATTTA
TTATATTAATTAGTTTAATATTATTTAAATATTTTTTCCTTATTTTTTTT
TATTATTTCATTAAATTATATTATATTGTATATTTTTCCAATACTTCTTT
TTTTCAACTTAATATTTAAATATCTTATATGTTTATTTATTTATATATTT
TCTCTTCTTTTGTTATCTACTTCTTTTCTTTCTCCTTATGTTTATTTATA
TGTGATTTAATCTTTCTCTCCTTTAAGGATATCATATACTCACTAATACA
ATCATGGTCATTGTATTACTTATGTTGGTACTTCTTATTCTCATATACCC
TTATCCTCCCTTTGTTATTCTTTTCCTTTCATCCCTAACTCACTATTCCC
TTCCATTTCATACTTAGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_l09.b1 MSMg01no264_l09.b1 CHROMAT_FILE:
MSMg01no264_l09.b1 PHD_FILE: MSMg01no264_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:58 2005
         (294 letters)



>mm_chr2_111053321_111054014
          Length = 694

 Score =  534 bits (276), Expect = e-156
 Identities = 287/292 (98%), Gaps = 3/292 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   aatgaaacttggaacatgatgtgcatacaatatgtgtatatgaaaatttataaaataaaa 62
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 206 aatggaacttggaacatgatgtgcatacaatatgtgtatatgaaaatttataaaat---a 262

                                                                       
Query: 63  aattaaaaatatttaagttttaaacttgctttagggcatgctaaataaagaggaccactt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aattaaaaatatttaagttttaaacttgctttagggcatgctaaataaagaggaccactt 322

                                                                       
Query: 123 cactcctagaactgaaggatgatttgcacaatgtaaaaagtttgcatcctcaaataaaag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cactcctagaactgaaggatgatttgcacaatgtaaaaagtttgcatcctcaaataaaag 382

                                                                       
Query: 183 tttccacttctagaagagaaactttatgtggttatatattaggtcattataactactagt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tttccacttctagaagagaaactttatgtggttatatattaggtcattataactactagt 442

                                                               
Query: 243 attatgtaagaaagaaatttaagatctcatttcaaagttaattcagcatttc 294
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 443 attatgtaagaaagaaatttaagatctcatttcaaagttcattcagcatttc 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)