BAC Information

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BAC

Clone NameMSMg01-265A17
Chromosome2 (Build37)
Map Location 166,733,336 - 166,733,505
singlet/doubletsinglet
Overlap geneCse1l
Upstream geneLOC546780, Ncoa3, Sulf2, LOC670775, Ppia-ps2_2197.1, BC067047, Trp53rk, Arfgef2, LOC670802
Downstream geneStau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265A17.T7 (MSMg01no265_a17.b1)MSMg01-265A17.TJ (MSMg01no265_a17.g1)
ACCAG406421AG406422
length918747
length of high quality
(start - end)
105 (47 - 151)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no265_a17.b1 PHD_FILE: MSMg01no265_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:25 2005CHROMAT_FILE: MSMg01no265_a17.g1 PHD_FILE: MSMg01no265_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:25 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGNAATTCCNAGCG
ACTGCTGTATGGNTCCTTAGTGTGCATGTCNCAGGACAACTTCGAGACGT
TTCTTTTTGCCACCGTTTCAAACCGAAGAGCACGAAAATCTCCTGCCAAG
GNNATTTCCNGCTTGTGCTTCAACGANNCAAAGCCCNNCNNCTGCCTGGC
TGACNNTTCCAGCCCTCCTGACTCTTTTCCTTCTTGNTNGNATNANNNNN
TTCCTTACTTTTGANGCTTATCNNNCNCGTTCCTGGNANGGNCTTCCNAN
ANNNCCCNGNAANAAAAAANGCCCCCCTTTTTTTTTTTTTTTTTNNNNNC
NNNGNGACTTCCTATGTNNANAAATTCTTAAGTTTTNNTTCCANNGNCCG
AANNTTCTTTTTTTTTTTTTTTTTTTTTTTTTNNNNTTTTTTTTTCCCCC
AAGAAAAAAAAAAAAAAAAAAAAGANNNTGGGGGGGGGGGGTTGGGGNTN
NTTNNNTNNNNNTTNTNTTTTTTTTTTTTGCGGGCCCAGCCCCAAAAGAG
AAGCTAAGATNNNNNNNAAAANCCNNNGGGAGTAAANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTCCTTNNNNNNNNNNNNNNNNNNNNNNAN
NAANNNNNTTCTTNNNNNNNNNNNNNNNNNNNNNNNNNAAAACAACNNNN
NCTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANAANNANAANACA
CAAAAGAAAGAAAAAAATCTAGAAAGGNNNNNNNNNAAGTCNCTCCTCTC
TAAGCTCCTTACGGTNCAANACTTNNNAAGGNNNACNNGTTCTTNCCCCC
NNNNNNNNNNNNNNNNNANNNNAAAAAACAAAAAAAAAGGACCTNTTNAG
CTTTTNNNAAGGTNNNTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXGGGCGTCTTAGGAAAATCCAAGTCAA
GTGGTGGGAAGAAGAGCTGGTGCAGGGCTTTGTGGCCGTGTAAGTTTGGG
TTTGATACAGAGTGGAAGCAGAGAAATGATGTAGGGACTCAGGTTACTGC
CCAGCCTCCTGTTGTCTTGAAGTGTGCTTAGTAACTGTTCTTTTAAAAAA
GCCAAGGGTAGGGTGAGCAAGATGGATGGATGGAAAGTAACCCTAAGTGA
CCCCTCCCTGGCCTGACAACTGGGTTCCCTGGGACCCCAGTGCTGGAAGG
GGCGAGCTGACTCCTTTTTGTTGCCTCCTGACTTTCACACATATGCTGTG
GCACATGTGCATATACCCCCCGCCTATAGTAAAATCTCGGGGAACAGGAG
AGGTGGCTCGGTAGTCAAGAGCATGTATTGGTCTTGCAGAGGACCCAAGG
GTGGTTTCCAGTACCTACAGGTGGGCCAGAATTGCCTATACCTCTAGCTC
CAGAGAATCTGATGGCCCCTAGCTTCCATCGACTCTTAGGTATACATACA
GGCAGAAACATATACAGATACACATAAATTTGTAAAAAACTTTTAAGGTG
GGAACAGATGTTAAGTTAATCTCTTGATGTATTGTTCATTTTCATTTATT
GAGTTCCTTTCCCTCTTCCCAATGCTAGGTAGGCCTCAGAAACGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_a17.g1 MSMg01no265_a17.g1 CHROMAT_FILE:
MSMg01no265_a17.g1 PHD_FILE: MSMg01no265_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:25 2005
         (289 letters)



>mm_chr2_166733136_166733824
          Length = 689

 Score =  313 bits (162), Expect = 6e-90
 Identities = 168/170 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggcgtcttaggaaaatccaagtcaagtggtgggaagaagagctggtgcagggctttgtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 gggcgtcttaggaaaatccaagtcaagtggtgggaagaagagctggtgcaggactttgtg 260

                                                                       
Query: 61  gccgtgtaagtttgggtttgatacagagtggaagcagagaaatgatgtagggactcaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccgtgtaagtttgggtttgatacagagtggaagcagagaaatgatgtagggactcaggt 320

                                                             
Query: 121 tactgcccagcctcctgttgtcttgaagtgtgcttagtaactgttctttt 170
           |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactgcccagactcctgttgtcttgaagtgtgcttagtaactgttctttt 370



 Score =  116 bits (60), Expect = 1e-30
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                       
Query: 156 agtaactgttcttttaaaaaagccaagggtagggtgagcaagatggatggatggaaagta 215
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 agtaactgttcttttaaaaaagccaagggtagggtgagcaagatggatggatggaaagta 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)