BAC Information

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BAC

Clone NameMSMg01-265B14
Chromosome2 (Build37)
Map Location 91,440,880 - 91,441,163
singlet/doubletsinglet
Overlap geneCkap5
Upstream geneNup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941
Downstream geneF2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265B14.T7 (MSMg01no265_b14.b1)MSMg01-265B14.TJ (MSMg01no265_b14.g1)
ACCAG406459AG406460
length704811
length of high quality
(start - end)
284 (10 - 293)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no265_b14.b1 PHD_FILE: MSMg01no265_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:29 2005CHROMAT_FILE: MSMg01no265_b14.g1 PHD_FILE: MSMg01no265_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATGATTGAAATGATAATGGTACAGTCCGCTGCGAAATGCCAGAGCTTGT
CCAGCACAAACTTGATGACATTTTTGAACCTGTCCTTATTCCTGAACCTA
AGTAAGTTCAGCTTTCTCAAATACAAACAGCTTGTGATCATTAGAGTGTA
TACCTGGAAGTATGCTGTTGAAAGTTCCTAGAGTTGGTTACTACCTAGTA
GTGACCTCTTTACTAAAATCTGGATCTAGTAAAGAATTGCATAATTCCCA
CTCATATTCATATTGAATTTTTCCTTTTGATGTGTTGTCTAGGATTTTTT
TTGTTTCCCCACCCCCCCGATGAATGCACAGTAATACAGTATCCTCCCCC
CCCCCCCATTATCTCAAAAGTAGACAGTGGTGACATCAACACAAGTATCC
AAGCTCTGACACAGGTAATGGTAATGCTTCCCACAGTATTGACTTCACTG
ACCTCTGTAGAGACTTGTTATAATAATGTATTATATACTAGTATAATAAC
TGTATTGAAGTTTCCTGTTAGTGTCCCGTTTTTTTCCTGATTTTTTAAAT
AAGGACCCCTTGTATCTCTTGTCTTCCCTTTTGTATAACTCCTCCTGTAA
TCTAATCTCTGTTTTCTACCTTATGTCTTGCTATGTTTCCCTACCTAGTT
CCTCCTATAATAATTGTTATTGCTTCTTATGTCTCTAGTTATTTGTTTCC
TCCC
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGACTGACTAGCCTAGTAACGT
CAATGAGCTCCAGTTTCAGTGAGAAGCCCTGTCACAAAAATAAGGTGAAG
GGCAATTGAGGAAGATAACCCAGCATCTACCTCTGGCTTCCACACATATA
CACTGCGGTGCTTTGAATGAAAATGGACCCCACAAGCTCATGCATTTAAT
TCATGCTCAGTGGAACTGTTTTAGGAAGGATTAGGTGGTGTGGGCTTGTT
GAGGAAGATGTGTCACTGGTAGTAAGCATTTAGTTTTTAAAAGCCAATTC
TAGGTCCAGGTGTGTTCTCTCTCTCTCTCCCTCTCCCCCTCTCTGCCTCA
TGTTTGTCATTCATATACCACCCCCCCAGCTACTGAACAAACACCATGCA
ACCTCCCCACCATGATGGTCATGGACTTACCCTCTAAATCTGTAAGCAAG
CCCTTAACTGAATGGTTTCCTTTTTGTAAGTTGCCTTGGTCATGATGCCA
CTTTACAGTATTATATAAGCATCTATGGCAAACATGACCATGAGTACACA
CACACTCTATTTTCCTCAACATTTCTCAATTAACCGCACACAAATCTCCT
AAACCTGTGGATGACTCACCCAGTGTGTTTTATCTTATCTTCTCTGTTTC
ATTTTTGCCCCTATTAACCATCCGCCACCATCTTTTATATTTTTACCTTA
ATATTATCTTATAAACTTGCACTATCTTTTTTACTCTCTTAGATAAACAA
TATTCTATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_b14.b1 MSMg01no265_b14.b1 CHROMAT_FILE:
MSMg01no265_b14.b1 PHD_FILE: MSMg01no265_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:29 2005
         (284 letters)



>mm_chr2_91440680_91441363
          Length = 684

 Score =  511 bits (264), Expect = e-149
 Identities = 279/284 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgataatggtacagtccgctgcgaaatgccagagcttgtccagcacaaacttgatgac 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgataatggtacagtccgctgtgaaatgccagagcttgtccagcacaaacttgatgac 260

                                                                       
Query: 61  atttttgaacctgtccttattcctgaacctaagtaagttcagctttctcaaatacaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttttgaacctgtccttattcctgaacctaagtaagttcagctttctcaaatacaaaca 320

                                                                       
Query: 121 gcttgtgatcattagagtgtatacctggaagtatgctgttgaaagttcctagagttggtt 180
           |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 321 gcttgtgatcattagagtctatacctggaagtatgctgttgaaaattcctagagttgatt 380

                                                                       
Query: 181 actacctagtagtgacctctttactaaaatctggatctagtaaagaattgcataattccc 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 actacctagtagtgacctctttactaaaacctggatctagtaaagaattgcataattccc 440

                                                       
Query: 241 actcatattcatattgaatttttccttttgatgtgttgtctagg 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actcatattcatattgaatttttccttttgatgtgttgtctagg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)